miRNA display CGI


Results 1 - 20 of 275 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13968 5' -59.1 NC_003521.1 + 31885 1.09 0.00252
Target:  5'- uCCACCUACCGGCCAUCCGCCACCUGAc -3'
miRNA:   3'- -GGUGGAUGGCCGGUAGGCGGUGGACU- -5'
13968 5' -59.1 NC_003521.1 + 118304 0.8 0.206882
Target:  5'- aCCACCgccGCCGGCCugcCCGCCGCCg-- -3'
miRNA:   3'- -GGUGGa--UGGCCGGua-GGCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 44767 0.8 0.232282
Target:  5'- uCCACCUcGCCGGCCuUCCGCCcggugcucuacaACCUGc -3'
miRNA:   3'- -GGUGGA-UGGCCGGuAGGCGG------------UGGACu -5'
13968 5' -59.1 NC_003521.1 + 63493 0.79 0.24875
Target:  5'- gCCGCCgguuCCGGCCGuUCCGCUGCCgGAa -3'
miRNA:   3'- -GGUGGau--GGCCGGU-AGGCGGUGGaCU- -5'
13968 5' -59.1 NC_003521.1 + 182435 0.77 0.331357
Target:  5'- cCCACgcGCCGGCCGUCCGUCACgaGu -3'
miRNA:   3'- -GGUGgaUGGCCGGUAGGCGGUGgaCu -5'
13968 5' -59.1 NC_003521.1 + 68507 0.76 0.383564
Target:  5'- uCCGCCgcgACCGGCCuggCGCCACCg-- -3'
miRNA:   3'- -GGUGGa--UGGCCGGuagGCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 138483 0.76 0.383564
Target:  5'- gCCACCUGCCGcCCGUCUaCCAgCUGAu -3'
miRNA:   3'- -GGUGGAUGGCcGGUAGGcGGUgGACU- -5'
13968 5' -59.1 NC_003521.1 + 116085 0.75 0.391455
Target:  5'- gCGCCUGCUGaGCCAcCCGC-GCCUGAg -3'
miRNA:   3'- gGUGGAUGGC-CGGUaGGCGgUGGACU- -5'
13968 5' -59.1 NC_003521.1 + 85661 0.75 0.424055
Target:  5'- gCCugCUGCCGGCCAagcgCaGCCGCUUGu -3'
miRNA:   3'- -GGugGAUGGCCGGUa---GgCGGUGGACu -5'
13968 5' -59.1 NC_003521.1 + 164605 0.75 0.424055
Target:  5'- aCGCC-ACCGGCCG-CCGCCACUc-- -3'
miRNA:   3'- gGUGGaUGGCCGGUaGGCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 11741 0.75 0.424055
Target:  5'- aCCACgguUUGGCCAUCCacGCCGCCUGGg -3'
miRNA:   3'- -GGUGgauGGCCGGUAGG--CGGUGGACU- -5'
13968 5' -59.1 NC_003521.1 + 142358 0.74 0.458224
Target:  5'- gCCGCCg--CGGCCG-CCGCCGCCUc- -3'
miRNA:   3'- -GGUGGaugGCCGGUaGGCGGUGGAcu -5'
13968 5' -59.1 NC_003521.1 + 224414 0.74 0.466995
Target:  5'- aCACCUcGCCGGCCAggCGCUGCgUGGu -3'
miRNA:   3'- gGUGGA-UGGCCGGUagGCGGUGgACU- -5'
13968 5' -59.1 NC_003521.1 + 17757 0.74 0.466995
Target:  5'- aCCGCCgugACCGGCgGcgCCGCUACCg-- -3'
miRNA:   3'- -GGUGGa--UGGCCGgUa-GGCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 171112 0.74 0.475851
Target:  5'- aCCGCgUACCucagGGCCG-CCGCCACCg-- -3'
miRNA:   3'- -GGUGgAUGG----CCGGUaGGCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 43746 0.74 0.484791
Target:  5'- gCCGCCg--CGGCCAgcacggCCGCCGCgCUGGc -3'
miRNA:   3'- -GGUGGaugGCCGGUa-----GGCGGUG-GACU- -5'
13968 5' -59.1 NC_003521.1 + 131319 0.74 0.484791
Target:  5'- gCCACCgcguCCgaGGCCcgCCGCCGCCg-- -3'
miRNA:   3'- -GGUGGau--GG--CCGGuaGGCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 217599 0.73 0.493809
Target:  5'- -gACCgGCC-GCCGUCCGCCACCg-- -3'
miRNA:   3'- ggUGGaUGGcCGGUAGGCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 179235 0.73 0.493809
Target:  5'- cCCGCC-GCgGGCCuUCUGgCGCCUGAa -3'
miRNA:   3'- -GGUGGaUGgCCGGuAGGCgGUGGACU- -5'
13968 5' -59.1 NC_003521.1 + 49569 0.73 0.493809
Target:  5'- aCCACCUGCCgcgugGGCCGcggCGCCGCCUc- -3'
miRNA:   3'- -GGUGGAUGG-----CCGGUag-GCGGUGGAcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.