miRNA display CGI


Results 21 - 40 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13968 5' -59.1 NC_003521.1 + 31733 0.73 0.502904
Target:  5'- aCGCCg--CGGCCAccgccUCCGCCGCCUcGAc -3'
miRNA:   3'- gGUGGaugGCCGGU-----AGGCGGUGGA-CU- -5'
13968 5' -59.1 NC_003521.1 + 240745 0.73 0.512071
Target:  5'- uCCgACCgGCCGGCCcgCCGCaCGCCg-- -3'
miRNA:   3'- -GG-UGGaUGGCCGGuaGGCG-GUGGacu -5'
13968 5' -59.1 NC_003521.1 + 196 0.73 0.512071
Target:  5'- uCCgACCgGCCGGCCcgCCGCaCGCCg-- -3'
miRNA:   3'- -GG-UGGaUGGCCGGuaGGCG-GUGGacu -5'
13968 5' -59.1 NC_003521.1 + 200570 0.73 0.512071
Target:  5'- uCCgACCgGCCGGCCcgCCGCaCGCCg-- -3'
miRNA:   3'- -GG-UGGaUGGCCGGuaGGCG-GUGGacu -5'
13968 5' -59.1 NC_003521.1 + 90216 0.73 0.521307
Target:  5'- gCCGCCagagACgCGGCuuuuuCAUCCGCCACCaGAu -3'
miRNA:   3'- -GGUGGa---UG-GCCG-----GUAGGCGGUGGaCU- -5'
13968 5' -59.1 NC_003521.1 + 88034 0.73 0.521307
Target:  5'- gCACCUGgccCUGGCC-UgCGCCACCUGu -3'
miRNA:   3'- gGUGGAU---GGCCGGuAgGCGGUGGACu -5'
13968 5' -59.1 NC_003521.1 + 168795 0.73 0.521307
Target:  5'- gCCGCCgcGCUGGCCG-CCaGCCugCUGGc -3'
miRNA:   3'- -GGUGGa-UGGCCGGUaGG-CGGugGACU- -5'
13968 5' -59.1 NC_003521.1 + 92130 0.73 0.521307
Target:  5'- aCCGCCgccGCCGuCCugGUCCGCCGcCCUGGa -3'
miRNA:   3'- -GGUGGa--UGGCcGG--UAGGCGGU-GGACU- -5'
13968 5' -59.1 NC_003521.1 + 222898 0.73 0.521307
Target:  5'- gCGCCUGCCGGCCcuucgaucacauGUCgGCCGCg-GAg -3'
miRNA:   3'- gGUGGAUGGCCGG------------UAGgCGGUGgaCU- -5'
13968 5' -59.1 NC_003521.1 + 46900 0.73 0.521307
Target:  5'- cCCGCC-GCCGacGCCGUCUaCCGCCUGGc -3'
miRNA:   3'- -GGUGGaUGGC--CGGUAGGcGGUGGACU- -5'
13968 5' -59.1 NC_003521.1 + 122066 0.73 0.530606
Target:  5'- cCCACCacgGCCGaGCgCAaguaCCGCCACCUGc -3'
miRNA:   3'- -GGUGGa--UGGC-CG-GUa---GGCGGUGGACu -5'
13968 5' -59.1 NC_003521.1 + 165907 0.73 0.530606
Target:  5'- cCCGCgCUGCCgGGCCGacuccaccgCCGCCACCg-- -3'
miRNA:   3'- -GGUG-GAUGG-CCGGUa--------GGCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 196017 0.73 0.539965
Target:  5'- gUCGCCcuCCGGCCAUCCGCUcagcguuugucgGCCUa- -3'
miRNA:   3'- -GGUGGauGGCCGGUAGGCGG------------UGGAcu -5'
13968 5' -59.1 NC_003521.1 + 193190 0.73 0.539965
Target:  5'- gCCGCCagaGCC-GCCGUCacgGCCGCCUGGa -3'
miRNA:   3'- -GGUGGa--UGGcCGGUAGg--CGGUGGACU- -5'
13968 5' -59.1 NC_003521.1 + 102002 0.73 0.539965
Target:  5'- aCgACCUGCCGGCCuUCC-CCAUCUc- -3'
miRNA:   3'- -GgUGGAUGGCCGGuAGGcGGUGGAcu -5'
13968 5' -59.1 NC_003521.1 + 214303 0.72 0.54938
Target:  5'- uUACCUGuCCGGCCAccggucuaaCGCCACCcUGAg -3'
miRNA:   3'- gGUGGAU-GGCCGGUag-------GCGGUGG-ACU- -5'
13968 5' -59.1 NC_003521.1 + 31705 0.72 0.54938
Target:  5'- aCGCCgUGCUGGCgcugcgcauCAUCCGCCugCUGc -3'
miRNA:   3'- gGUGG-AUGGCCG---------GUAGGCGGugGACu -5'
13968 5' -59.1 NC_003521.1 + 163798 0.72 0.556947
Target:  5'- aCCACC-GCCGGCCucaaccgcaugCUGCC-CCUGGa -3'
miRNA:   3'- -GGUGGaUGGCCGGua---------GGCGGuGGACU- -5'
13968 5' -59.1 NC_003521.1 + 143254 0.72 0.568354
Target:  5'- aUCACC-ACCu-CCAUCCGCgGCCUGAc -3'
miRNA:   3'- -GGUGGaUGGccGGUAGGCGgUGGACU- -5'
13968 5' -59.1 NC_003521.1 + 111505 0.72 0.577904
Target:  5'- aCCGCCUGCUGGgCGaccucuucCCGCCGCCg-- -3'
miRNA:   3'- -GGUGGAUGGCCgGUa-------GGCGGUGGacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.