Results 21 - 40 of 275 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13968 | 5' | -59.1 | NC_003521.1 | + | 151080 | 0.66 | 0.891565 |
Target: 5'- gCCGC--GCCGGCUG-CCGUCACCg-- -3' miRNA: 3'- -GGUGgaUGGCCGGUaGGCGGUGGacu -5' |
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13968 | 5' | -59.1 | NC_003521.1 | + | 186664 | 0.66 | 0.891565 |
Target: 5'- uCUACCUGCacugcuGCCG-CCGCUGCUUGGg -3' miRNA: 3'- -GGUGGAUGgc----CGGUaGGCGGUGGACU- -5' |
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13968 | 5' | -59.1 | NC_003521.1 | + | 92185 | 0.66 | 0.891565 |
Target: 5'- uCCACCgcAUC-GCCG-CCGCCGuCCUGGa -3' miRNA: 3'- -GGUGGa-UGGcCGGUaGGCGGU-GGACU- -5' |
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13968 | 5' | -59.1 | NC_003521.1 | + | 129829 | 0.66 | 0.891565 |
Target: 5'- gCCGCCUGCUgcuggGGCCcgUgGCCGugcCCUGc -3' miRNA: 3'- -GGUGGAUGG-----CCGGuaGgCGGU---GGACu -5' |
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13968 | 5' | -59.1 | NC_003521.1 | + | 53473 | 0.66 | 0.891565 |
Target: 5'- aCgGCCUGCCGggcgaGCCGggCCGCgCGCCg-- -3' miRNA: 3'- -GgUGGAUGGC-----CGGUa-GGCG-GUGGacu -5' |
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13968 | 5' | -59.1 | NC_003521.1 | + | 224600 | 0.66 | 0.890295 |
Target: 5'- uUCGCac-UCGGCCAggcggcagggcgCCGCCACCUcGAa -3' miRNA: 3'- -GGUGgauGGCCGGUa-----------GGCGGUGGA-CU- -5' |
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13968 | 5' | -59.1 | NC_003521.1 | + | 41037 | 0.66 | 0.885132 |
Target: 5'- -gACgCUGCaGGCCAUCCGuaCCACCg-- -3' miRNA: 3'- ggUG-GAUGgCCGGUAGGC--GGUGGacu -5' |
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13968 | 5' | -59.1 | NC_003521.1 | + | 213288 | 0.66 | 0.885132 |
Target: 5'- cCCGCUcgGCCGGCuCGcCCGgCGCCaUGGu -3' miRNA: 3'- -GGUGGa-UGGCCG-GUaGGCgGUGG-ACU- -5' |
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13968 | 5' | -59.1 | NC_003521.1 | + | 118531 | 0.66 | 0.885132 |
Target: 5'- aCCGCCgcuggUGCCGGCUA-CCGCgugaucCACCcGAc -3' miRNA: 3'- -GGUGG-----AUGGCCGGUaGGCG------GUGGaCU- -5' |
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13968 | 5' | -59.1 | NC_003521.1 | + | 2736 | 0.66 | 0.885132 |
Target: 5'- aCCGCCUcGCUGGCUggCUGCUGCUa-- -3' miRNA: 3'- -GGUGGA-UGGCCGGuaGGCGGUGGacu -5' |
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13968 | 5' | -59.1 | NC_003521.1 | + | 68730 | 0.66 | 0.885132 |
Target: 5'- gCCGCCcGCaCGGacuuCAUCaCGCCGCCgcUGAc -3' miRNA: 3'- -GGUGGaUG-GCCg---GUAG-GCGGUGG--ACU- -5' |
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13968 | 5' | -59.1 | NC_003521.1 | + | 125889 | 0.66 | 0.885132 |
Target: 5'- aCCugCUGCgGGCCAaggacugcaUCCGCgGCg--- -3' miRNA: 3'- -GGugGAUGgCCGGU---------AGGCGgUGgacu -5' |
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13968 | 5' | -59.1 | NC_003521.1 | + | 51375 | 0.66 | 0.884478 |
Target: 5'- aCCAgcCCUcCCGGCUGUCCGagaagguugccuaCCACCUcaGAa -3' miRNA: 3'- -GGU--GGAuGGCCGGUAGGC-------------GGUGGA--CU- -5' |
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13968 | 5' | -59.1 | NC_003521.1 | + | 150827 | 0.66 | 0.878501 |
Target: 5'- gCGCC-GCC-GCCG-CCGCCACCa-- -3' miRNA: 3'- gGUGGaUGGcCGGUaGGCGGUGGacu -5' |
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13968 | 5' | -59.1 | NC_003521.1 | + | 212527 | 0.66 | 0.878501 |
Target: 5'- uCUACCUaccGCCGGCCA-CCGaCUACgCgGAc -3' miRNA: 3'- -GGUGGA---UGGCCGGUaGGC-GGUG-GaCU- -5' |
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13968 | 5' | -59.1 | NC_003521.1 | + | 32890 | 0.66 | 0.878501 |
Target: 5'- gCCGCCggUGCUGccGCCGUgcCCGCCGCCc-- -3' miRNA: 3'- -GGUGG--AUGGC--CGGUA--GGCGGUGGacu -5' |
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13968 | 5' | -59.1 | NC_003521.1 | + | 209200 | 0.66 | 0.878501 |
Target: 5'- cCCACCgucgGCCgcgguGGCC--CUGCCAgCUGAc -3' miRNA: 3'- -GGUGGa---UGG-----CCGGuaGGCGGUgGACU- -5' |
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13968 | 5' | -59.1 | NC_003521.1 | + | 117178 | 0.66 | 0.878501 |
Target: 5'- -aGCCUAaCCcGCCGUcgcugCCGCCGCCcGAg -3' miRNA: 3'- ggUGGAU-GGcCGGUA-----GGCGGUGGaCU- -5' |
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13968 | 5' | -59.1 | NC_003521.1 | + | 113348 | 0.66 | 0.878501 |
Target: 5'- gCACCcGgCGGCCGUCUG-CGCCUc- -3' miRNA: 3'- gGUGGaUgGCCGGUAGGCgGUGGAcu -5' |
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13968 | 5' | -59.1 | NC_003521.1 | + | 145996 | 0.66 | 0.877827 |
Target: 5'- cCCG-CUGCCGGCUuuugucaAUCCgcGCCACCa-- -3' miRNA: 3'- -GGUgGAUGGCCGG-------UAGG--CGGUGGacu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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