Results 41 - 60 of 275 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13968 | 5' | -59.1 | NC_003521.1 | + | 71520 | 0.66 | 0.87715 |
Target: 5'- gCgACCgacGCCGGCCGacgucaccgagcCCGCCGCCg-- -3' miRNA: 3'- -GgUGGa--UGGCCGGUa-----------GGCGGUGGacu -5' |
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13968 | 5' | -59.1 | NC_003521.1 | + | 100459 | 0.66 | 0.873741 |
Target: 5'- gCCGCCgaagaagaguggugaCGGCCGUugcuaCCGCCGCCa-- -3' miRNA: 3'- -GGUGGaug------------GCCGGUA-----GGCGGUGGacu -5' |
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13968 | 5' | -59.1 | NC_003521.1 | + | 238980 | 0.66 | 0.871673 |
Target: 5'- gCC-CCgucCCGGUCugucGUCCGCCAUgCUGAg -3' miRNA: 3'- -GGuGGau-GGCCGG----UAGGCGGUG-GACU- -5' |
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13968 | 5' | -59.1 | NC_003521.1 | + | 145378 | 0.66 | 0.871673 |
Target: 5'- uCCACCUGCCGGUaGUuaGgCGCCa-- -3' miRNA: 3'- -GGUGGAUGGCCGgUAggCgGUGGacu -5' |
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13968 | 5' | -59.1 | NC_003521.1 | + | 239785 | 0.66 | 0.871673 |
Target: 5'- gCC-CCgacGCCGGCCAUCUGgCugCg-- -3' miRNA: 3'- -GGuGGa--UGGCCGGUAGGCgGugGacu -5' |
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13968 | 5' | -59.1 | NC_003521.1 | + | 202335 | 0.66 | 0.871673 |
Target: 5'- gCC-CCgucCCGGUCugucGUCCGCCAUgCUGAg -3' miRNA: 3'- -GGuGGau-GGCCGG----UAGGCGGUG-GACU- -5' |
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13968 | 5' | -59.1 | NC_003521.1 | + | 217083 | 0.66 | 0.871673 |
Target: 5'- aCCuCCUG-CGcGCCAUCCGgCguaACCUGAc -3' miRNA: 3'- -GGuGGAUgGC-CGGUAGGCgG---UGGACU- -5' |
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13968 | 5' | -59.1 | NC_003521.1 | + | 86522 | 0.66 | 0.871673 |
Target: 5'- uUCGCCUcGCCGGCCGacUUCGCC-CUg-- -3' miRNA: 3'- -GGUGGA-UGGCCGGU--AGGCGGuGGacu -5' |
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13968 | 5' | -59.1 | NC_003521.1 | + | 214031 | 0.66 | 0.871673 |
Target: 5'- uCUACgcGCUGGCCAUcuucuacguggCCGCCACCa-- -3' miRNA: 3'- -GGUGgaUGGCCGGUA-----------GGCGGUGGacu -5' |
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13968 | 5' | -59.1 | NC_003521.1 | + | 201530 | 0.66 | 0.871673 |
Target: 5'- gCC-CCgacGCCGGCCAUCUGgCugCg-- -3' miRNA: 3'- -GGuGGa--UGGCCGGUAGGCgGugGacu -5' |
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13968 | 5' | -59.1 | NC_003521.1 | + | 76622 | 0.66 | 0.871673 |
Target: 5'- aCCACC-GCCGccccGCCGuUCCGCCuCCUc- -3' miRNA: 3'- -GGUGGaUGGC----CGGU-AGGCGGuGGAcu -5' |
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13968 | 5' | -59.1 | NC_003521.1 | + | 116782 | 0.66 | 0.871673 |
Target: 5'- gCCGCCgcggcacGCUGGCCGUCUacgGCCGCgaccccgaCUGGg -3' miRNA: 3'- -GGUGGa------UGGCCGGUAGG---CGGUG--------GACU- -5' |
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13968 | 5' | -59.1 | NC_003521.1 | + | 219473 | 0.66 | 0.870979 |
Target: 5'- cUCugCUGCCuGGCgA-CCGCCaucauggGCCUGGg -3' miRNA: 3'- -GGugGAUGG-CCGgUaGGCGG-------UGGACU- -5' |
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13968 | 5' | -59.1 | NC_003521.1 | + | 132260 | 0.66 | 0.869587 |
Target: 5'- aCCACCUggGCCGcaacGCCAaccucuugaccgugUgCCGCCACgUGGa -3' miRNA: 3'- -GGUGGA--UGGC----CGGU--------------A-GGCGGUGgACU- -5' |
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13968 | 5' | -59.1 | NC_003521.1 | + | 53072 | 0.67 | 0.867484 |
Target: 5'- uUCACCgUGaaGGCgGUccagguggagccgcaCCGCCGCCUGGa -3' miRNA: 3'- -GGUGG-AUggCCGgUA---------------GGCGGUGGACU- -5' |
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13968 | 5' | -59.1 | NC_003521.1 | + | 63983 | 0.67 | 0.864653 |
Target: 5'- aCCAgauCCUgGCCGGCUuUCUGCC-CCUaGAg -3' miRNA: 3'- -GGU---GGA-UGGCCGGuAGGCGGuGGA-CU- -5' |
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13968 | 5' | -59.1 | NC_003521.1 | + | 148687 | 0.67 | 0.864653 |
Target: 5'- gCCGCCgGCgCGGCCGcCCG-CACCaUGGc -3' miRNA: 3'- -GGUGGaUG-GCCGGUaGGCgGUGG-ACU- -5' |
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13968 | 5' | -59.1 | NC_003521.1 | + | 54755 | 0.67 | 0.864653 |
Target: 5'- aCGCCgggccGCCGGCCAUCaaguUCAuCCUGGg -3' miRNA: 3'- gGUGGa----UGGCCGGUAGgc--GGU-GGACU- -5' |
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13968 | 5' | -59.1 | NC_003521.1 | + | 100481 | 0.67 | 0.864653 |
Target: 5'- uCCACCUcGCCGGCCua-CGaCCugCa-- -3' miRNA: 3'- -GGUGGA-UGGCCGGuagGC-GGugGacu -5' |
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13968 | 5' | -59.1 | NC_003521.1 | + | 136236 | 0.67 | 0.864653 |
Target: 5'- gCUACCUcaugacgcacGCCGGCCGcuaCGCCgACgUGAu -3' miRNA: 3'- -GGUGGA----------UGGCCGGUag-GCGG-UGgACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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