miRNA display CGI


Results 1 - 20 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13968 5' -59.1 NC_003521.1 + 31885 1.09 0.00252
Target:  5'- uCCACCUACCGGCCAUCCGCCACCUGAc -3'
miRNA:   3'- -GGUGGAUGGCCGGUAGGCGGUGGACU- -5'
13968 5' -59.1 NC_003521.1 + 102002 0.73 0.539965
Target:  5'- aCgACCUGCCGGCCuUCC-CCAUCUc- -3'
miRNA:   3'- -GgUGGAUGGCCGGuAGGcGGUGGAcu -5'
13968 5' -59.1 NC_003521.1 + 31705 0.72 0.54938
Target:  5'- aCGCCgUGCUGGCgcugcgcauCAUCCGCCugCUGc -3'
miRNA:   3'- gGUGG-AUGGCCG---------GUAGGCGGugGACu -5'
13968 5' -59.1 NC_003521.1 + 35024 0.65 0.903224
Target:  5'- gCACCUcAUCGGCguggucuCGUaCGCCGCCUGu -3'
miRNA:   3'- gGUGGA-UGGCCG-------GUAgGCGGUGGACu -5'
13968 5' -59.1 NC_003521.1 + 85661 0.75 0.424055
Target:  5'- gCCugCUGCCGGCCAagcgCaGCCGCUUGu -3'
miRNA:   3'- -GGugGAUGGCCGGUa---GgCGGUGGACu -5'
13968 5' -59.1 NC_003521.1 + 17757 0.74 0.466995
Target:  5'- aCCGCCgugACCGGCgGcgCCGCUACCg-- -3'
miRNA:   3'- -GGUGGa--UGGCCGgUa-GGCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 43746 0.74 0.484791
Target:  5'- gCCGCCg--CGGCCAgcacggCCGCCGCgCUGGc -3'
miRNA:   3'- -GGUGGaugGCCGGUa-----GGCGGUG-GACU- -5'
13968 5' -59.1 NC_003521.1 + 217599 0.73 0.493809
Target:  5'- -gACCgGCC-GCCGUCCGCCACCg-- -3'
miRNA:   3'- ggUGGaUGGcCGGUAGGCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 90216 0.73 0.521307
Target:  5'- gCCGCCagagACgCGGCuuuuuCAUCCGCCACCaGAu -3'
miRNA:   3'- -GGUGGa---UG-GCCG-----GUAGGCGGUGGaCU- -5'
13968 5' -59.1 NC_003521.1 + 122066 0.73 0.530606
Target:  5'- cCCACCacgGCCGaGCgCAaguaCCGCCACCUGc -3'
miRNA:   3'- -GGUGGa--UGGC-CG-GUa---GGCGGUGGACu -5'
13968 5' -59.1 NC_003521.1 + 168795 0.73 0.521307
Target:  5'- gCCGCCgcGCUGGCCG-CCaGCCugCUGGc -3'
miRNA:   3'- -GGUGGa-UGGCCGGUaGG-CGGugGACU- -5'
13968 5' -59.1 NC_003521.1 + 88034 0.73 0.521307
Target:  5'- gCACCUGgccCUGGCC-UgCGCCACCUGu -3'
miRNA:   3'- gGUGGAU---GGCCGGuAgGCGGUGGACu -5'
13968 5' -59.1 NC_003521.1 + 63493 0.79 0.24875
Target:  5'- gCCGCCgguuCCGGCCGuUCCGCUGCCgGAa -3'
miRNA:   3'- -GGUGGau--GGCCGGU-AGGCGGUGGaCU- -5'
13968 5' -59.1 NC_003521.1 + 92130 0.73 0.521307
Target:  5'- aCCGCCgccGCCGuCCugGUCCGCCGcCCUGGa -3'
miRNA:   3'- -GGUGGa--UGGCcGG--UAGGCGGU-GGACU- -5'
13968 5' -59.1 NC_003521.1 + 182435 0.77 0.331357
Target:  5'- cCCACgcGCCGGCCGUCCGUCACgaGu -3'
miRNA:   3'- -GGUGgaUGGCCGGUAGGCGGUGgaCu -5'
13968 5' -59.1 NC_003521.1 + 200570 0.73 0.512071
Target:  5'- uCCgACCgGCCGGCCcgCCGCaCGCCg-- -3'
miRNA:   3'- -GG-UGGaUGGCCGGuaGGCG-GUGGacu -5'
13968 5' -59.1 NC_003521.1 + 46900 0.73 0.521307
Target:  5'- cCCGCC-GCCGacGCCGUCUaCCGCCUGGc -3'
miRNA:   3'- -GGUGGaUGGC--CGGUAGGcGGUGGACU- -5'
13968 5' -59.1 NC_003521.1 + 214303 0.72 0.54938
Target:  5'- uUACCUGuCCGGCCAccggucuaaCGCCACCcUGAg -3'
miRNA:   3'- gGUGGAU-GGCCGGUag-------GCGGUGG-ACU- -5'
13968 5' -59.1 NC_003521.1 + 116085 0.75 0.391455
Target:  5'- gCGCCUGCUGaGCCAcCCGC-GCCUGAg -3'
miRNA:   3'- gGUGGAUGGC-CGGUaGGCGgUGGACU- -5'
13968 5' -59.1 NC_003521.1 + 131319 0.74 0.484791
Target:  5'- gCCACCgcguCCgaGGCCcgCCGCCGCCg-- -3'
miRNA:   3'- -GGUGGau--GG--CCGGuaGGCGGUGGacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.