miRNA display CGI


Results 1 - 20 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13968 5' -59.1 NC_003521.1 + 240745 0.73 0.512071
Target:  5'- uCCgACCgGCCGGCCcgCCGCaCGCCg-- -3'
miRNA:   3'- -GG-UGGaUGGCCGGuaGGCG-GUGGacu -5'
13968 5' -59.1 NC_003521.1 + 239785 0.66 0.871673
Target:  5'- gCC-CCgacGCCGGCCAUCUGgCugCg-- -3'
miRNA:   3'- -GGuGGa--UGGCCGGUAGGCgGugGacu -5'
13968 5' -59.1 NC_003521.1 + 239024 0.69 0.749491
Target:  5'- cCCACCUcugucgagcuccGCCGGCCcgacuUCUGCUGCUgGAa -3'
miRNA:   3'- -GGUGGA------------UGGCCGGu----AGGCGGUGGaCU- -5'
13968 5' -59.1 NC_003521.1 + 238980 0.66 0.871673
Target:  5'- gCC-CCgucCCGGUCugucGUCCGCCAUgCUGAg -3'
miRNA:   3'- -GGuGGau-GGCCGG----UAGGCGGUG-GACU- -5'
13968 5' -59.1 NC_003521.1 + 238615 0.7 0.712384
Target:  5'- -gGCCUgggcguaggGCCGGCCGUCCGUUcCCcGAa -3'
miRNA:   3'- ggUGGA---------UGGCCGGUAGGCGGuGGaCU- -5'
13968 5' -59.1 NC_003521.1 + 234925 0.68 0.776383
Target:  5'- gCGCCggcuCCGGCUccuggcuguuggGUCCGUCGuCCUGGa -3'
miRNA:   3'- gGUGGau--GGCCGG------------UAGGCGGU-GGACU- -5'
13968 5' -59.1 NC_003521.1 + 233713 0.69 0.728303
Target:  5'- uCCACCUcAgCGGCCuggagaaggaggacgCCGCCGCCg-- -3'
miRNA:   3'- -GGUGGA-UgGCCGGua-------------GGCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 233177 0.68 0.785127
Target:  5'- gCCGCCgUGgCGGCCG-CCGUUACCg-- -3'
miRNA:   3'- -GGUGG-AUgGCCGGUaGGCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 232969 0.71 0.626055
Target:  5'- uCC-CCaUGgaGGCCGUCCGCCACCc-- -3'
miRNA:   3'- -GGuGG-AUggCCGGUAGGCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 224600 0.66 0.890295
Target:  5'- uUCGCac-UCGGCCAggcggcagggcgCCGCCACCUcGAa -3'
miRNA:   3'- -GGUGgauGGCCGGUa-----------GGCGGUGGA-CU- -5'
13968 5' -59.1 NC_003521.1 + 224414 0.74 0.466995
Target:  5'- aCACCUcGCCGGCCAggCGCUGCgUGGu -3'
miRNA:   3'- gGUGGA-UGGCCGGUagGCGGUGgACU- -5'
13968 5' -59.1 NC_003521.1 + 224283 0.7 0.683887
Target:  5'- cCCGCCccgACCgccgGGCCcgCCGCUGCCgcagGAg -3'
miRNA:   3'- -GGUGGa--UGG----CCGGuaGGCGGUGGa---CU- -5'
13968 5' -59.1 NC_003521.1 + 223801 0.71 0.606738
Target:  5'- gCCGCCagacgACgGGCCugcgCCGCCGCCa-- -3'
miRNA:   3'- -GGUGGa----UGgCCGGua--GGCGGUGGacu -5'
13968 5' -59.1 NC_003521.1 + 223625 0.67 0.826859
Target:  5'- gUCGCUgcugACCaaGGCCG-CCGCCgagGCCUGGg -3'
miRNA:   3'- -GGUGGa---UGG--CCGGUaGGCGG---UGGACU- -5'
13968 5' -59.1 NC_003521.1 + 222898 0.73 0.521307
Target:  5'- gCGCCUGCCGGCCcuucgaucacauGUCgGCCGCg-GAg -3'
miRNA:   3'- gGUGGAUGGCCGG------------UAGgCGGUGgaCU- -5'
13968 5' -59.1 NC_003521.1 + 222161 0.69 0.767524
Target:  5'- gCGCCgcgcGCCGGCaAUCCGCC-CCa-- -3'
miRNA:   3'- gGUGGa---UGGCCGgUAGGCGGuGGacu -5'
13968 5' -59.1 NC_003521.1 + 221338 0.66 0.897794
Target:  5'- aCACCgaGCgGGCCAcCUGC-ACCUGGc -3'
miRNA:   3'- gGUGGa-UGgCCGGUaGGCGgUGGACU- -5'
13968 5' -59.1 NC_003521.1 + 220498 0.68 0.793747
Target:  5'- uCUACCUGCUGGCCAaCa---GCCUGAc -3'
miRNA:   3'- -GGUGGAUGGCCGGUaGgcggUGGACU- -5'
13968 5' -59.1 NC_003521.1 + 219666 0.67 0.842493
Target:  5'- gCAgCUACuCGGCCucgucgugcCCGUCGCCUGu -3'
miRNA:   3'- gGUgGAUG-GCCGGua-------GGCGGUGGACu -5'
13968 5' -59.1 NC_003521.1 + 219473 0.66 0.870979
Target:  5'- cUCugCUGCCuGGCgA-CCGCCaucauggGCCUGGg -3'
miRNA:   3'- -GGugGAUGG-CCGgUaGGCGG-------UGGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.