Results 41 - 60 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13969 | 3' | -54.8 | NC_003521.1 | + | 126161 | 0.71 | 0.77815 |
Target: 5'- aACAGGUCCU---GCACGCGCACg--- -3' miRNA: 3'- -UGUUCAGGAagcCGUGCGCGUGguua -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 130299 | 0.68 | 0.93206 |
Target: 5'- gGCGAGgCCg-CGGCGcCGCGCAuCCAGg -3' miRNA: 3'- -UGUUCaGGaaGCCGU-GCGCGU-GGUUa -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 130459 | 0.68 | 0.93206 |
Target: 5'- cCGAGUUUUUCGGuCGCGUGCuggcCCAGc -3' miRNA: 3'- uGUUCAGGAAGCC-GUGCGCGu---GGUUa -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 131473 | 0.68 | 0.909996 |
Target: 5'- gACGAGUCCUucUCGGCGCugacCGUGuCCGAa -3' miRNA: 3'- -UGUUCAGGA--AGCCGUGc---GCGU-GGUUa -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 133370 | 0.69 | 0.884222 |
Target: 5'- aGCAcGGUCCgcCGGCACaGCGCGgCGGUc -3' miRNA: 3'- -UGU-UCAGGaaGCCGUG-CGCGUgGUUA- -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 138692 | 0.69 | 0.870001 |
Target: 5'- gACAAGgccgugagCCUgggCGGCACGgGCGCUGGc -3' miRNA: 3'- -UGUUCa-------GGAa--GCCGUGCgCGUGGUUa -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 139584 | 0.7 | 0.854939 |
Target: 5'- cCAGGUCUUgccgUGGCGcCGCGgCACCAGg -3' miRNA: 3'- uGUUCAGGAa---GCCGU-GCGC-GUGGUUa -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 140732 | 0.69 | 0.890337 |
Target: 5'- cGCGAGUCCUcgUCGGCggucgagGCGCcCGCCu-- -3' miRNA: 3'- -UGUUCAGGA--AGCCG-------UGCGcGUGGuua -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 141141 | 0.76 | 0.529971 |
Target: 5'- cCGAGaCCUUCGGCAacccCGUGCACCGGg -3' miRNA: 3'- uGUUCaGGAAGCCGU----GCGCGUGGUUa -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 142717 | 0.67 | 0.936987 |
Target: 5'- cGCGAGUCC-UCGGaCAUGUGguCCu-- -3' miRNA: 3'- -UGUUCAGGaAGCC-GUGCGCguGGuua -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 143524 | 0.68 | 0.926897 |
Target: 5'- uCGGG-CCUgaUCcGCACGCGCGCCGc- -3' miRNA: 3'- uGUUCaGGA--AGcCGUGCGCGUGGUua -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 145258 | 0.69 | 0.896918 |
Target: 5'- uGCAGGgcgCCUccucggccUCGGCGgccagcuCGCGCGCCGGc -3' miRNA: 3'- -UGUUCa--GGA--------AGCCGU-------GCGCGUGGUUa -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 149172 | 0.74 | 0.650615 |
Target: 5'- ---cGUCCgucUCGGCGCGCGuCGCCAc- -3' miRNA: 3'- uguuCAGGa--AGCCGUGCGC-GUGGUua -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 149535 | 0.69 | 0.897564 |
Target: 5'- uCGAGUCgggCGGCGCGCGCuCCu-- -3' miRNA: 3'- uGUUCAGgaaGCCGUGCGCGuGGuua -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 153396 | 0.66 | 0.965054 |
Target: 5'- cGCAGGaucUCC-UCGuGCAgGUGCGCCAc- -3' miRNA: 3'- -UGUUC---AGGaAGC-CGUgCGCGUGGUua -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 155332 | 0.72 | 0.740315 |
Target: 5'- cGCGGGUCCcggcgggGGCGCGgGCACCGGc -3' miRNA: 3'- -UGUUCAGGaag----CCGUGCgCGUGGUUa -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 161985 | 0.66 | 0.973843 |
Target: 5'- -----aCCUUCGGCugGUGCuCCGu- -3' miRNA: 3'- uguucaGGAAGCCGugCGCGuGGUua -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 166171 | 0.69 | 0.87722 |
Target: 5'- cGCAGGgCCgagCGGCGCuccagggucccGCGCACCAc- -3' miRNA: 3'- -UGUUCaGGaa-GCCGUG-----------CGCGUGGUua -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 167193 | 0.66 | 0.973843 |
Target: 5'- -gGAGgCCUUCugcuugggcuGGCAgGCGCGCCGc- -3' miRNA: 3'- ugUUCaGGAAG----------CCGUgCGCGUGGUua -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 175184 | 0.7 | 0.830873 |
Target: 5'- cCAGGUCCU--GGCugGCGCGCg--- -3' miRNA: 3'- uGUUCAGGAagCCGugCGCGUGguua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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