miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13969 3' -54.8 NC_003521.1 + 63266 0.69 0.877219
Target:  5'- gACGAGUCCUuccUCGGCGaccggGUGCAgCAGc -3'
miRNA:   3'- -UGUUCAGGA---AGCCGUg----CGCGUgGUUa -5'
13969 3' -54.8 NC_003521.1 + 65358 0.66 0.965054
Target:  5'- gACGugcuGUCCggggagaCGGCGCGC-CGCCGAUc -3'
miRNA:   3'- -UGUu---CAGGaa-----GCCGUGCGcGUGGUUA- -5'
13969 3' -54.8 NC_003521.1 + 69352 0.68 0.93206
Target:  5'- uGCAAGUCCUgCGuGCGCcCGCACguGg -3'
miRNA:   3'- -UGUUCAGGAaGC-CGUGcGCGUGguUa -5'
13969 3' -54.8 NC_003521.1 + 70201 0.68 0.90202
Target:  5'- gGCAGGUCgggUCGGCccucgaagcgcuugGCGCGCAgCAGg -3'
miRNA:   3'- -UGUUCAGga-AGCCG--------------UGCGCGUgGUUa -5'
13969 3' -54.8 NC_003521.1 + 70704 0.68 0.926897
Target:  5'- cGCAAG-CUgcgUCGGCGCcUGCGCCGGa -3'
miRNA:   3'- -UGUUCaGGa--AGCCGUGcGCGUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 72950 0.7 0.847107
Target:  5'- -uGAGcUCCUgUGGCACGCGCAUCc-- -3'
miRNA:   3'- ugUUC-AGGAaGCCGUGCGCGUGGuua -5'
13969 3' -54.8 NC_003521.1 + 73216 0.68 0.93206
Target:  5'- cCGAGcgCCUgCGGCGCcucuGCGCGCCGc- -3'
miRNA:   3'- uGUUCa-GGAaGCCGUG----CGCGUGGUua -5'
13969 3' -54.8 NC_003521.1 + 82738 0.67 0.941681
Target:  5'- uGCGGGUCCgcuugCGGgacgagauCACGCGCgACCGGc -3'
miRNA:   3'- -UGUUCAGGaa---GCC--------GUGCGCG-UGGUUa -5'
13969 3' -54.8 NC_003521.1 + 88496 0.72 0.7306
Target:  5'- gGCGGGUagagCGGCACGCGCAgCGAc -3'
miRNA:   3'- -UGUUCAggaaGCCGUGCGCGUgGUUa -5'
13969 3' -54.8 NC_003521.1 + 91630 0.72 0.749936
Target:  5'- gGCGuAGUCCUcgUGGCcgccgguggcgACGCGCGCCGAg -3'
miRNA:   3'- -UGU-UCAGGAa-GCCG-----------UGCGCGUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 95437 0.67 0.941681
Target:  5'- aGCAGGcCCa--GGCcguCGCGCACCGGc -3'
miRNA:   3'- -UGUUCaGGaagCCGu--GCGCGUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 97480 0.66 0.961711
Target:  5'- ---cGUCCUUgGGCACGUagACCAGg -3'
miRNA:   3'- uguuCAGGAAgCCGUGCGcgUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 101893 0.67 0.950372
Target:  5'- --uGGUCCaUCuuguacauguagGGCAgGCGCACCGAg -3'
miRNA:   3'- uguUCAGGaAG------------CCGUgCGCGUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 102822 0.68 0.921498
Target:  5'- aGCAAGUag--CGGCGCugcgagaaGCGCGCCAGg -3'
miRNA:   3'- -UGUUCAggaaGCCGUG--------CGCGUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 103447 0.68 0.926897
Target:  5'- cCAGGUCg--CGGCGguUGCGCGCCAc- -3'
miRNA:   3'- uGUUCAGgaaGCCGU--GCGCGUGGUua -5'
13969 3' -54.8 NC_003521.1 + 114820 0.67 0.946142
Target:  5'- uACAuGGagCUg-GGCACGCGCACCGu- -3'
miRNA:   3'- -UGU-UCagGAagCCGUGCGCGUGGUua -5'
13969 3' -54.8 NC_003521.1 + 117386 0.67 0.954374
Target:  5'- uGCAGGUg---CGGCACGCGCugUg-- -3'
miRNA:   3'- -UGUUCAggaaGCCGUGCGCGugGuua -5'
13969 3' -54.8 NC_003521.1 + 122656 0.68 0.934059
Target:  5'- aGCAGGUCCUggagcgcgaucgaGGCGCccaGCACCGAc -3'
miRNA:   3'- -UGUUCAGGAag-----------CCGUGcg-CGUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 123084 0.7 0.847107
Target:  5'- cACAGcUCgUagGGCACGCGCACCu-- -3'
miRNA:   3'- -UGUUcAGgAagCCGUGCGCGUGGuua -5'
13969 3' -54.8 NC_003521.1 + 124940 0.7 0.847107
Target:  5'- uACAgcAGUCCgugggUgGGCACGUGCAgCAGg -3'
miRNA:   3'- -UGU--UCAGGa----AgCCGUGCGCGUgGUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.