miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13969 3' -54.8 NC_003521.1 + 2872 0.67 0.950372
Target:  5'- gACGAGUCCaUCugGGUAuUGgGCACCAGUc -3'
miRNA:   3'- -UGUUCAGGaAG--CCGU-GCgCGUGGUUA- -5'
13969 3' -54.8 NC_003521.1 + 13699 0.68 0.915864
Target:  5'- uGCGAGUgCUUUCGaGCGC-UGCGCCAGg -3'
miRNA:   3'- -UGUUCA-GGAAGC-CGUGcGCGUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 15058 0.68 0.921498
Target:  5'- cGCGAG-CgCgagCGGCGCGUGCugCAAc -3'
miRNA:   3'- -UGUUCaG-Gaa-GCCGUGCGCGugGUUa -5'
13969 3' -54.8 NC_003521.1 + 16728 0.76 0.549696
Target:  5'- gGCGAGUUCggcgaccgcCGGCGCGCGCGCCc-- -3'
miRNA:   3'- -UGUUCAGGaa-------GCCGUGCGCGUGGuua -5'
13969 3' -54.8 NC_003521.1 + 18763 0.66 0.973843
Target:  5'- gACGGGUCgCUgcugcgaCGGCugGUGCcccccGCCGAUa -3'
miRNA:   3'- -UGUUCAG-GAa------GCCGugCGCG-----UGGUUA- -5'
13969 3' -54.8 NC_003521.1 + 19219 0.67 0.950372
Target:  5'- uGCGAccuggCUUUCGGCuCGCGCACgCAAa -3'
miRNA:   3'- -UGUUca---GGAAGCCGuGCGCGUG-GUUa -5'
13969 3' -54.8 NC_003521.1 + 24876 0.66 0.968186
Target:  5'- aGCAGGUCCUcaUGGUGCGCuaccuCACCAu- -3'
miRNA:   3'- -UGUUCAGGAa-GCCGUGCGc----GUGGUua -5'
13969 3' -54.8 NC_003521.1 + 30343 0.68 0.915864
Target:  5'- aGCGAG----UCGGCgGCGCGCACCAc- -3'
miRNA:   3'- -UGUUCaggaAGCCG-UGCGCGUGGUua -5'
13969 3' -54.8 NC_003521.1 + 30442 0.67 0.949127
Target:  5'- aACAuGUCCaggCGGCcgagggugccgaugACGCGCACCu-- -3'
miRNA:   3'- -UGUuCAGGaa-GCCG--------------UGCGCGUGGuua -5'
13969 3' -54.8 NC_003521.1 + 32019 0.69 0.884222
Target:  5'- cGCAGGUaa-UUGGUGCGCGUGCCGAa -3'
miRNA:   3'- -UGUUCAggaAGCCGUGCGCGUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 34366 0.71 0.813927
Target:  5'- cCAGGUCCUg-GGCguuGCGCACCAGc -3'
miRNA:   3'- uGUUCAGGAagCCGug-CGCGUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 35379 0.68 0.903895
Target:  5'- cCGAGUCCcccUCGGCgaggACGCGgGCCGc- -3'
miRNA:   3'- uGUUCAGGa--AGCCG----UGCGCgUGGUua -5'
13969 3' -54.8 NC_003521.1 + 35636 0.73 0.71093
Target:  5'- cGCAGGUCCc---GCACGCGCugCGAg -3'
miRNA:   3'- -UGUUCAGGaagcCGUGCGCGugGUUa -5'
13969 3' -54.8 NC_003521.1 + 37412 0.66 0.965054
Target:  5'- cACGGG-CCUgaccgugUGGCGCG-GCGCCGAg -3'
miRNA:   3'- -UGUUCaGGAa------GCCGUGCgCGUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 46393 0.67 0.946142
Target:  5'- cGCGGGgugCgUggGGCGCGCGgGCCAGg -3'
miRNA:   3'- -UGUUCa--GgAagCCGUGCGCgUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 50332 0.67 0.936987
Target:  5'- aGCGGGUCC-UCGGCccguuUGCGCuggauCCAAc -3'
miRNA:   3'- -UGUUCAGGaAGCCGu----GCGCGu----GGUUa -5'
13969 3' -54.8 NC_003521.1 + 56456 0.71 0.796331
Target:  5'- cCAGGUCCgagaGGCGC-CGCGCCAc- -3'
miRNA:   3'- uGUUCAGGaag-CCGUGcGCGUGGUua -5'
13969 3' -54.8 NC_003521.1 + 57142 0.72 0.7306
Target:  5'- gAUAGGUCUcgUCGGcCACGCGCGgCAGg -3'
miRNA:   3'- -UGUUCAGGa-AGCC-GUGCGCGUgGUUa -5'
13969 3' -54.8 NC_003521.1 + 61449 0.67 0.936987
Target:  5'- uGCAGGUCa-UCcGCACGCGCGUCAAg -3'
miRNA:   3'- -UGUUCAGgaAGcCGUGCGCGUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 62343 0.66 0.968186
Target:  5'- gACucGUCCUUCGGCAgcacgGUGCACg--- -3'
miRNA:   3'- -UGuuCAGGAAGCCGUg----CGCGUGguua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.