miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13969 3' -54.8 NC_003521.1 + 224020 0.68 0.903895
Target:  5'- gGCGGGcCCggcggUCGGgGCGgGCGCCGu- -3'
miRNA:   3'- -UGUUCaGGa----AGCCgUGCgCGUGGUua -5'
13969 3' -54.8 NC_003521.1 + 138692 0.69 0.870001
Target:  5'- gACAAGgccgugagCCUgggCGGCACGgGCGCUGGc -3'
miRNA:   3'- -UGUUCa-------GGAa--GCCGUGCgCGUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 63266 0.69 0.877219
Target:  5'- gACGAGUCCUuccUCGGCGaccggGUGCAgCAGc -3'
miRNA:   3'- -UGUUCAGGA---AGCCGUg----CGCGUgGUUa -5'
13969 3' -54.8 NC_003521.1 + 133370 0.69 0.884222
Target:  5'- aGCAcGGUCCgcCGGCACaGCGCGgCGGUc -3'
miRNA:   3'- -UGU-UCAGGaaGCCGUG-CGCGUgGUUA- -5'
13969 3' -54.8 NC_003521.1 + 32019 0.69 0.884222
Target:  5'- cGCAGGUaa-UUGGUGCGCGUGCCGAa -3'
miRNA:   3'- -UGUUCAggaAGCCGUGCGCGUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 140732 0.69 0.890337
Target:  5'- cGCGAGUCCUcgUCGGCggucgagGCGCcCGCCu-- -3'
miRNA:   3'- -UGUUCAGGA--AGCCG-------UGCGcGUGGuua -5'
13969 3' -54.8 NC_003521.1 + 145258 0.69 0.896918
Target:  5'- uGCAGGgcgCCUccucggccUCGGCGgccagcuCGCGCGCCGGc -3'
miRNA:   3'- -UGUUCa--GGA--------AGCCGU-------GCGCGUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 149535 0.69 0.897564
Target:  5'- uCGAGUCgggCGGCGCGCGCuCCu-- -3'
miRNA:   3'- uGUUCAGgaaGCCGUGCGCGuGGuua -5'
13969 3' -54.8 NC_003521.1 + 70201 0.68 0.90202
Target:  5'- gGCAGGUCgggUCGGCccucgaagcgcuugGCGCGCAgCAGg -3'
miRNA:   3'- -UGUUCAGga-AGCCG--------------UGCGCGUgGUUa -5'
13969 3' -54.8 NC_003521.1 + 139584 0.7 0.854939
Target:  5'- cCAGGUCUUgccgUGGCGcCGCGgCACCAGg -3'
miRNA:   3'- uGUUCAGGAa---GCCGU-GCGC-GUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 123084 0.7 0.847107
Target:  5'- cACAGcUCgUagGGCACGCGCACCu-- -3'
miRNA:   3'- -UGUUcAGgAagCCGUGCGCGUGGuua -5'
13969 3' -54.8 NC_003521.1 + 72950 0.7 0.847107
Target:  5'- -uGAGcUCCUgUGGCACGCGCAUCc-- -3'
miRNA:   3'- ugUUC-AGGAaGCCGUGCGCGUGGuua -5'
13969 3' -54.8 NC_003521.1 + 35636 0.73 0.71093
Target:  5'- cGCAGGUCCc---GCACGCGCugCGAg -3'
miRNA:   3'- -UGUUCAGGaagcCGUGCGCGugGUUa -5'
13969 3' -54.8 NC_003521.1 + 57142 0.72 0.7306
Target:  5'- gAUAGGUCUcgUCGGcCACGCGCGgCAGg -3'
miRNA:   3'- -UGUUCAGGa-AGCC-GUGCGCGUgGUUa -5'
13969 3' -54.8 NC_003521.1 + 88496 0.72 0.7306
Target:  5'- gGCGGGUagagCGGCACGCGCAgCGAc -3'
miRNA:   3'- -UGUUCAggaaGCCGUGCGCGUgGUUa -5'
13969 3' -54.8 NC_003521.1 + 224078 0.72 0.7306
Target:  5'- ---cGUCCUccggCGGgCGCGCGCGCCGGc -3'
miRNA:   3'- uguuCAGGAa---GCC-GUGCGCGUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 126161 0.71 0.77815
Target:  5'- aACAGGUCCU---GCACGCGCACg--- -3'
miRNA:   3'- -UGUUCAGGAagcCGUGCGCGUGguua -5'
13969 3' -54.8 NC_003521.1 + 56456 0.71 0.796331
Target:  5'- cCAGGUCCgagaGGCGC-CGCGCCAc- -3'
miRNA:   3'- uGUUCAGGaag-CCGUGcGCGUGGUua -5'
13969 3' -54.8 NC_003521.1 + 34366 0.71 0.813927
Target:  5'- cCAGGUCCUg-GGCguuGCGCACCAGc -3'
miRNA:   3'- uGUUCAGGAagCCGug-CGCGUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 124940 0.7 0.847107
Target:  5'- uACAgcAGUCCgugggUgGGCACGUGCAgCAGg -3'
miRNA:   3'- -UGU--UCAGGa----AgCCGUGCGCGUgGUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.