miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13969 3' -54.8 NC_003521.1 + 208794 1.05 0.009837
Target:  5'- uACAAGUCCUUCGGCACGCGCACCAAUu -3'
miRNA:   3'- -UGUUCAGGAAGCCGUGCGCGUGGUUA- -5'
13969 3' -54.8 NC_003521.1 + 201804 0.67 0.941681
Target:  5'- aGCAA-UCCUUCGGCG-GCGC-CCGc- -3'
miRNA:   3'- -UGUUcAGGAAGCCGUgCGCGuGGUua -5'
13969 3' -54.8 NC_003521.1 + 239738 0.67 0.946142
Target:  5'- -gGAGUCCUcuggcuUCGGCcuCGCcCGCCGAUg -3'
miRNA:   3'- ugUUCAGGA------AGCCGu-GCGcGUGGUUA- -5'
13969 3' -54.8 NC_003521.1 + 167193 0.66 0.973843
Target:  5'- -gGAGgCCUUCugcuugggcuGGCAgGCGCGCCGc- -3'
miRNA:   3'- ugUUCaGGAAG----------CCGUgCGCGUGGUua -5'
13969 3' -54.8 NC_003521.1 + 207944 0.73 0.71093
Target:  5'- gGCAGcaCCggCGGCGCGgGCGCCAAa -3'
miRNA:   3'- -UGUUcaGGaaGCCGUGCgCGUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 155332 0.72 0.740315
Target:  5'- cGCGGGUCCcggcgggGGCGCGgGCACCGGc -3'
miRNA:   3'- -UGUUCAGGaag----CCGUGCgCGUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 178570 0.72 0.768863
Target:  5'- uGCAGGUCCUUCuccaGC-CGCGCGuCCAGc -3'
miRNA:   3'- -UGUUCAGGAAGc---CGuGCGCGU-GGUUa -5'
13969 3' -54.8 NC_003521.1 + 206227 0.71 0.78731
Target:  5'- cACGAGUCCaUCuGCGCGCGcCugCAGc -3'
miRNA:   3'- -UGUUCAGGaAGcCGUGCGC-GugGUUa -5'
13969 3' -54.8 NC_003521.1 + 131473 0.68 0.909996
Target:  5'- gACGAGUCCUucUCGGCGCugacCGUGuCCGAa -3'
miRNA:   3'- -UGUUCAGGA--AGCCGUGc---GCGU-GGUUa -5'
13969 3' -54.8 NC_003521.1 + 203546 0.67 0.936988
Target:  5'- ---uGUCgUagGGCGCGUGCACCGu- -3'
miRNA:   3'- uguuCAGgAagCCGUGCGCGUGGUua -5'
13969 3' -54.8 NC_003521.1 + 13699 0.68 0.915864
Target:  5'- uGCGAGUgCUUUCGaGCGC-UGCGCCAGg -3'
miRNA:   3'- -UGUUCA-GGAAGC-CGUGcGCGUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 166171 0.69 0.87722
Target:  5'- cGCAGGgCCgagCGGCGCuccagggucccGCGCACCAc- -3'
miRNA:   3'- -UGUUCaGGaa-GCCGUG-----------CGCGUGGUua -5'
13969 3' -54.8 NC_003521.1 + 181457 0.77 0.463271
Target:  5'- cGCGGcGUCCagCGGCugGCGCGCCGc- -3'
miRNA:   3'- -UGUU-CAGGaaGCCGugCGCGUGGUua -5'
13969 3' -54.8 NC_003521.1 + 15058 0.68 0.921498
Target:  5'- cGCGAG-CgCgagCGGCGCGUGCugCAAc -3'
miRNA:   3'- -UGUUCaG-Gaa-GCCGUGCGCGugGUUa -5'
13969 3' -54.8 NC_003521.1 + 141141 0.76 0.529971
Target:  5'- cCGAGaCCUUCGGCAacccCGUGCACCGGg -3'
miRNA:   3'- uGUUCaGGAAGCCGU----GCGCGUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 175184 0.7 0.830873
Target:  5'- cCAGGUCCU--GGCugGCGCGCg--- -3'
miRNA:   3'- uGUUCAGGAagCCGugCGCGUGguua -5'
13969 3' -54.8 NC_003521.1 + 69352 0.68 0.93206
Target:  5'- uGCAAGUCCUgCGuGCGCcCGCACguGg -3'
miRNA:   3'- -UGUUCAGGAaGC-CGUGcGCGUGguUa -5'
13969 3' -54.8 NC_003521.1 + 95437 0.67 0.941681
Target:  5'- aGCAGGcCCa--GGCcguCGCGCACCGGc -3'
miRNA:   3'- -UGUUCaGGaagCCGu--GCGCGUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 16728 0.76 0.549696
Target:  5'- gGCGAGUUCggcgaccgcCGGCGCGCGCGCCc-- -3'
miRNA:   3'- -UGUUCAGGaa-------GCCGUGCGCGUGGuua -5'
13969 3' -54.8 NC_003521.1 + 91630 0.72 0.749936
Target:  5'- gGCGuAGUCCUcgUGGCcgccgguggcgACGCGCGCCGAg -3'
miRNA:   3'- -UGU-UCAGGAa-GCCG-----------UGCGCGUGGUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.