miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13969 3' -54.8 NC_003521.1 + 208794 1.05 0.009837
Target:  5'- uACAAGUCCUUCGGCACGCGCACCAAUu -3'
miRNA:   3'- -UGUUCAGGAAGCCGUGCGCGUGGUUA- -5'
13969 3' -54.8 NC_003521.1 + 181457 0.77 0.463271
Target:  5'- cGCGGcGUCCagCGGCugGCGCGCCGc- -3'
miRNA:   3'- -UGUU-CAGGaaGCCGugCGCGUGGUua -5'
13969 3' -54.8 NC_003521.1 + 141141 0.76 0.529971
Target:  5'- cCGAGaCCUUCGGCAacccCGUGCACCGGg -3'
miRNA:   3'- uGUUCaGGAAGCCGU----GCGCGUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 16728 0.76 0.549696
Target:  5'- gGCGAGUUCggcgaccgcCGGCGCGCGCGCCc-- -3'
miRNA:   3'- -UGUUCAGGaa-------GCCGUGCGCGUGGuua -5'
13969 3' -54.8 NC_003521.1 + 149172 0.74 0.650615
Target:  5'- ---cGUCCgucUCGGCGCGCGuCGCCAc- -3'
miRNA:   3'- uguuCAGGa--AGCCGUGCGC-GUGGUua -5'
13969 3' -54.8 NC_003521.1 + 35636 0.73 0.71093
Target:  5'- cGCAGGUCCc---GCACGCGCugCGAg -3'
miRNA:   3'- -UGUUCAGGaagcCGUGCGCGugGUUa -5'
13969 3' -54.8 NC_003521.1 + 207944 0.73 0.71093
Target:  5'- gGCAGcaCCggCGGCGCGgGCGCCAAa -3'
miRNA:   3'- -UGUUcaGGaaGCCGUGCgCGUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 57142 0.72 0.7306
Target:  5'- gAUAGGUCUcgUCGGcCACGCGCGgCAGg -3'
miRNA:   3'- -UGUUCAGGa-AGCC-GUGCGCGUgGUUa -5'
13969 3' -54.8 NC_003521.1 + 88496 0.72 0.7306
Target:  5'- gGCGGGUagagCGGCACGCGCAgCGAc -3'
miRNA:   3'- -UGUUCAggaaGCCGUGCGCGUgGUUa -5'
13969 3' -54.8 NC_003521.1 + 224078 0.72 0.7306
Target:  5'- ---cGUCCUccggCGGgCGCGCGCGCCGGc -3'
miRNA:   3'- uguuCAGGAa---GCC-GUGCGCGUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 155332 0.72 0.740315
Target:  5'- cGCGGGUCCcggcgggGGCGCGgGCACCGGc -3'
miRNA:   3'- -UGUUCAGGaag----CCGUGCgCGUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 91630 0.72 0.749936
Target:  5'- gGCGuAGUCCUcgUGGCcgccgguggcgACGCGCGCCGAg -3'
miRNA:   3'- -UGU-UCAGGAa-GCCG-----------UGCGCGUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 178570 0.72 0.768863
Target:  5'- uGCAGGUCCUUCuccaGC-CGCGCGuCCAGc -3'
miRNA:   3'- -UGUUCAGGAAGc---CGuGCGCGU-GGUUa -5'
13969 3' -54.8 NC_003521.1 + 126161 0.71 0.77815
Target:  5'- aACAGGUCCU---GCACGCGCACg--- -3'
miRNA:   3'- -UGUUCAGGAagcCGUGCGCGUGguua -5'
13969 3' -54.8 NC_003521.1 + 206227 0.71 0.78731
Target:  5'- cACGAGUCCaUCuGCGCGCGcCugCAGc -3'
miRNA:   3'- -UGUUCAGGaAGcCGUGCGC-GugGUUa -5'
13969 3' -54.8 NC_003521.1 + 56456 0.71 0.796331
Target:  5'- cCAGGUCCgagaGGCGC-CGCGCCAc- -3'
miRNA:   3'- uGUUCAGGaag-CCGUGcGCGUGGUua -5'
13969 3' -54.8 NC_003521.1 + 34366 0.71 0.813927
Target:  5'- cCAGGUCCUg-GGCguuGCGCACCAGc -3'
miRNA:   3'- uGUUCAGGAagCCGug-CGCGUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 175184 0.7 0.830873
Target:  5'- cCAGGUCCU--GGCugGCGCGCg--- -3'
miRNA:   3'- uGUUCAGGAagCCGugCGCGUGguua -5'
13969 3' -54.8 NC_003521.1 + 124940 0.7 0.847107
Target:  5'- uACAgcAGUCCgugggUgGGCACGUGCAgCAGg -3'
miRNA:   3'- -UGU--UCAGGa----AgCCGUGCGCGUgGUUa -5'
13969 3' -54.8 NC_003521.1 + 123084 0.7 0.847107
Target:  5'- cACAGcUCgUagGGCACGCGCACCu-- -3'
miRNA:   3'- -UGUUcAGgAagCCGUGCGCGUGGuua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.