miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13969 3' -54.8 NC_003521.1 + 124940 0.7 0.847107
Target:  5'- uACAgcAGUCCgugggUgGGCACGUGCAgCAGg -3'
miRNA:   3'- -UGU--UCAGGa----AgCCGUGCGCGUgGUUa -5'
13969 3' -54.8 NC_003521.1 + 139584 0.7 0.854939
Target:  5'- cCAGGUCUUgccgUGGCGcCGCGgCACCAGg -3'
miRNA:   3'- uGUUCAGGAa---GCCGU-GCGC-GUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 138692 0.69 0.870001
Target:  5'- gACAAGgccgugagCCUgggCGGCACGgGCGCUGGc -3'
miRNA:   3'- -UGUUCa-------GGAa--GCCGUGCgCGUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 63266 0.69 0.877219
Target:  5'- gACGAGUCCUuccUCGGCGaccggGUGCAgCAGc -3'
miRNA:   3'- -UGUUCAGGA---AGCCGUg----CGCGUgGUUa -5'
13969 3' -54.8 NC_003521.1 + 166171 0.69 0.87722
Target:  5'- cGCAGGgCCgagCGGCGCuccagggucccGCGCACCAc- -3'
miRNA:   3'- -UGUUCaGGaa-GCCGUG-----------CGCGUGGUua -5'
13969 3' -54.8 NC_003521.1 + 133370 0.69 0.884222
Target:  5'- aGCAcGGUCCgcCGGCACaGCGCGgCGGUc -3'
miRNA:   3'- -UGU-UCAGGaaGCCGUG-CGCGUgGUUA- -5'
13969 3' -54.8 NC_003521.1 + 32019 0.69 0.884222
Target:  5'- cGCAGGUaa-UUGGUGCGCGUGCCGAa -3'
miRNA:   3'- -UGUUCAggaAGCCGUGCGCGUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 140732 0.69 0.890337
Target:  5'- cGCGAGUCCUcgUCGGCggucgagGCGCcCGCCu-- -3'
miRNA:   3'- -UGUUCAGGA--AGCCG-------UGCGcGUGGuua -5'
13969 3' -54.8 NC_003521.1 + 145258 0.69 0.896918
Target:  5'- uGCAGGgcgCCUccucggccUCGGCGgccagcuCGCGCGCCGGc -3'
miRNA:   3'- -UGUUCa--GGA--------AGCCGU-------GCGCGUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 149535 0.69 0.897564
Target:  5'- uCGAGUCgggCGGCGCGCGCuCCu-- -3'
miRNA:   3'- uGUUCAGgaaGCCGUGCGCGuGGuua -5'
13969 3' -54.8 NC_003521.1 + 70201 0.68 0.90202
Target:  5'- gGCAGGUCgggUCGGCccucgaagcgcuugGCGCGCAgCAGg -3'
miRNA:   3'- -UGUUCAGga-AGCCG--------------UGCGCGUgGUUa -5'
13969 3' -54.8 NC_003521.1 + 35379 0.68 0.903895
Target:  5'- cCGAGUCCcccUCGGCgaggACGCGgGCCGc- -3'
miRNA:   3'- uGUUCAGGa--AGCCG----UGCGCgUGGUua -5'
13969 3' -54.8 NC_003521.1 + 224020 0.68 0.903895
Target:  5'- gGCGGGcCCggcggUCGGgGCGgGCGCCGu- -3'
miRNA:   3'- -UGUUCaGGa----AGCCgUGCgCGUGGUua -5'
13969 3' -54.8 NC_003521.1 + 131473 0.68 0.909996
Target:  5'- gACGAGUCCUucUCGGCGCugacCGUGuCCGAa -3'
miRNA:   3'- -UGUUCAGGA--AGCCGUGc---GCGU-GGUUa -5'
13969 3' -54.8 NC_003521.1 + 30343 0.68 0.915864
Target:  5'- aGCGAG----UCGGCgGCGCGCACCAc- -3'
miRNA:   3'- -UGUUCaggaAGCCG-UGCGCGUGGUua -5'
13969 3' -54.8 NC_003521.1 + 13699 0.68 0.915864
Target:  5'- uGCGAGUgCUUUCGaGCGC-UGCGCCAGg -3'
miRNA:   3'- -UGUUCA-GGAAGC-CGUGcGCGUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 206674 0.68 0.915864
Target:  5'- uCAAGgCCUUCGuGCGCGUGgGCCu-- -3'
miRNA:   3'- uGUUCaGGAAGC-CGUGCGCgUGGuua -5'
13969 3' -54.8 NC_003521.1 + 102822 0.68 0.921498
Target:  5'- aGCAAGUag--CGGCGCugcgagaaGCGCGCCAGg -3'
miRNA:   3'- -UGUUCAggaaGCCGUG--------CGCGUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 15058 0.68 0.921498
Target:  5'- cGCGAG-CgCgagCGGCGCGUGCugCAAc -3'
miRNA:   3'- -UGUUCaG-Gaa-GCCGUGCGCGugGUUa -5'
13969 3' -54.8 NC_003521.1 + 70704 0.68 0.926897
Target:  5'- cGCAAG-CUgcgUCGGCGCcUGCGCCGGa -3'
miRNA:   3'- -UGUUCaGGa--AGCCGUGcGCGUGGUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.