Results 21 - 40 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13969 | 3' | -54.8 | NC_003521.1 | + | 114820 | 0.67 | 0.946142 |
Target: 5'- uACAuGGagCUg-GGCACGCGCACCGu- -3' miRNA: 3'- -UGU-UCagGAagCCGUGCGCGUGGUua -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 46393 | 0.67 | 0.946142 |
Target: 5'- cGCGGGgugCgUggGGCGCGCGgGCCAGg -3' miRNA: 3'- -UGUUCa--GgAagCCGUGCGCgUGGUUa -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 239738 | 0.67 | 0.946142 |
Target: 5'- -gGAGUCCUcuggcuUCGGCcuCGCcCGCCGAUg -3' miRNA: 3'- ugUUCAGGA------AGCCGu-GCGcGUGGUUA- -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 201804 | 0.67 | 0.941681 |
Target: 5'- aGCAA-UCCUUCGGCG-GCGC-CCGc- -3' miRNA: 3'- -UGUUcAGGAAGCCGUgCGCGuGGUua -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 82738 | 0.67 | 0.941681 |
Target: 5'- uGCGGGUCCgcuugCGGgacgagauCACGCGCgACCGGc -3' miRNA: 3'- -UGUUCAGGaa---GCC--------GUGCGCG-UGGUUa -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 95437 | 0.67 | 0.941681 |
Target: 5'- aGCAGGcCCa--GGCcguCGCGCACCGGc -3' miRNA: 3'- -UGUUCaGGaagCCGu--GCGCGUGGUUa -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 203546 | 0.67 | 0.936988 |
Target: 5'- ---uGUCgUagGGCGCGUGCACCGu- -3' miRNA: 3'- uguuCAGgAagCCGUGCGCGUGGUua -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 142717 | 0.67 | 0.936987 |
Target: 5'- cGCGAGUCC-UCGGaCAUGUGguCCu-- -3' miRNA: 3'- -UGUUCAGGaAGCC-GUGCGCguGGuua -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 50332 | 0.67 | 0.936987 |
Target: 5'- aGCGGGUCC-UCGGCccguuUGCGCuggauCCAAc -3' miRNA: 3'- -UGUUCAGGaAGCCGu----GCGCGu----GGUUa -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 61449 | 0.67 | 0.936987 |
Target: 5'- uGCAGGUCa-UCcGCACGCGCGUCAAg -3' miRNA: 3'- -UGUUCAGgaAGcCGUGCGCGUGGUUa -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 122656 | 0.68 | 0.934059 |
Target: 5'- aGCAGGUCCUggagcgcgaucgaGGCGCccaGCACCGAc -3' miRNA: 3'- -UGUUCAGGAag-----------CCGUGcg-CGUGGUUa -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 69352 | 0.68 | 0.93206 |
Target: 5'- uGCAAGUCCUgCGuGCGCcCGCACguGg -3' miRNA: 3'- -UGUUCAGGAaGC-CGUGcGCGUGguUa -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 130459 | 0.68 | 0.93206 |
Target: 5'- cCGAGUUUUUCGGuCGCGUGCuggcCCAGc -3' miRNA: 3'- uGUUCAGGAAGCC-GUGCGCGu---GGUUa -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 130299 | 0.68 | 0.93206 |
Target: 5'- gGCGAGgCCg-CGGCGcCGCGCAuCCAGg -3' miRNA: 3'- -UGUUCaGGaaGCCGU-GCGCGU-GGUUa -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 73216 | 0.68 | 0.93206 |
Target: 5'- cCGAGcgCCUgCGGCGCcucuGCGCGCCGc- -3' miRNA: 3'- uGUUCa-GGAaGCCGUG----CGCGUGGUua -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 103447 | 0.68 | 0.926897 |
Target: 5'- cCAGGUCg--CGGCGguUGCGCGCCAc- -3' miRNA: 3'- uGUUCAGgaaGCCGU--GCGCGUGGUua -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 143524 | 0.68 | 0.926897 |
Target: 5'- uCGGG-CCUgaUCcGCACGCGCGCCGc- -3' miRNA: 3'- uGUUCaGGA--AGcCGUGCGCGUGGUua -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 70704 | 0.68 | 0.926897 |
Target: 5'- cGCAAG-CUgcgUCGGCGCcUGCGCCGGa -3' miRNA: 3'- -UGUUCaGGa--AGCCGUGcGCGUGGUUa -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 102822 | 0.68 | 0.921498 |
Target: 5'- aGCAAGUag--CGGCGCugcgagaaGCGCGCCAGg -3' miRNA: 3'- -UGUUCAggaaGCCGUG--------CGCGUGGUUa -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 15058 | 0.68 | 0.921498 |
Target: 5'- cGCGAG-CgCgagCGGCGCGUGCugCAAc -3' miRNA: 3'- -UGUUCaG-Gaa-GCCGUGCGCGugGUUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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