miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13969 3' -54.8 NC_003521.1 + 114820 0.67 0.946142
Target:  5'- uACAuGGagCUg-GGCACGCGCACCGu- -3'
miRNA:   3'- -UGU-UCagGAagCCGUGCGCGUGGUua -5'
13969 3' -54.8 NC_003521.1 + 101893 0.67 0.950372
Target:  5'- --uGGUCCaUCuuguacauguagGGCAgGCGCACCGAg -3'
miRNA:   3'- uguUCAGGaAG------------CCGUgCGCGUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 30442 0.67 0.949127
Target:  5'- aACAuGUCCaggCGGCcgagggugccgaugACGCGCACCu-- -3'
miRNA:   3'- -UGUuCAGGaa-GCCG--------------UGCGCGUGGuua -5'
13969 3' -54.8 NC_003521.1 + 46393 0.67 0.946142
Target:  5'- cGCGGGgugCgUggGGCGCGCGgGCCAGg -3'
miRNA:   3'- -UGUUCa--GgAagCCGUGCGCgUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 117386 0.67 0.954374
Target:  5'- uGCAGGUg---CGGCACGCGCugUg-- -3'
miRNA:   3'- -UGUUCAggaaGCCGUGCGCGugGuua -5'
13969 3' -54.8 NC_003521.1 + 203546 0.67 0.936988
Target:  5'- ---uGUCgUagGGCGCGUGCACCGu- -3'
miRNA:   3'- uguuCAGgAagCCGUGCGCGUGGUua -5'
13969 3' -54.8 NC_003521.1 + 2872 0.67 0.950372
Target:  5'- gACGAGUCCaUCugGGUAuUGgGCACCAGUc -3'
miRNA:   3'- -UGUUCAGGaAG--CCGU-GCgCGUGGUUA- -5'
13969 3' -54.8 NC_003521.1 + 95437 0.67 0.941681
Target:  5'- aGCAGGcCCa--GGCcguCGCGCACCGGc -3'
miRNA:   3'- -UGUUCaGGaagCCGu--GCGCGUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 239738 0.67 0.946142
Target:  5'- -gGAGUCCUcuggcuUCGGCcuCGCcCGCCGAUg -3'
miRNA:   3'- ugUUCAGGA------AGCCGu-GCGcGUGGUUA- -5'
13969 3' -54.8 NC_003521.1 + 201804 0.67 0.941681
Target:  5'- aGCAA-UCCUUCGGCG-GCGC-CCGc- -3'
miRNA:   3'- -UGUUcAGGAAGCCGUgCGCGuGGUua -5'
13969 3' -54.8 NC_003521.1 + 15058 0.68 0.921498
Target:  5'- cGCGAG-CgCgagCGGCGCGUGCugCAAc -3'
miRNA:   3'- -UGUUCaG-Gaa-GCCGUGCGCGugGUUa -5'
13969 3' -54.8 NC_003521.1 + 69352 0.68 0.93206
Target:  5'- uGCAAGUCCUgCGuGCGCcCGCACguGg -3'
miRNA:   3'- -UGUUCAGGAaGC-CGUGcGCGUGguUa -5'
13969 3' -54.8 NC_003521.1 + 102822 0.68 0.921498
Target:  5'- aGCAAGUag--CGGCGCugcgagaaGCGCGCCAGg -3'
miRNA:   3'- -UGUUCAggaaGCCGUG--------CGCGUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 30343 0.68 0.915864
Target:  5'- aGCGAG----UCGGCgGCGCGCACCAc- -3'
miRNA:   3'- -UGUUCaggaAGCCG-UGCGCGUGGUua -5'
13969 3' -54.8 NC_003521.1 + 130459 0.68 0.93206
Target:  5'- cCGAGUUUUUCGGuCGCGUGCuggcCCAGc -3'
miRNA:   3'- uGUUCAGGAAGCC-GUGCGCGu---GGUUa -5'
13969 3' -54.8 NC_003521.1 + 73216 0.68 0.93206
Target:  5'- cCGAGcgCCUgCGGCGCcucuGCGCGCCGc- -3'
miRNA:   3'- uGUUCa-GGAaGCCGUG----CGCGUGGUua -5'
13969 3' -54.8 NC_003521.1 + 130299 0.68 0.93206
Target:  5'- gGCGAGgCCg-CGGCGcCGCGCAuCCAGg -3'
miRNA:   3'- -UGUUCaGGaaGCCGU-GCGCGU-GGUUa -5'
13969 3' -54.8 NC_003521.1 + 103447 0.68 0.926897
Target:  5'- cCAGGUCg--CGGCGguUGCGCGCCAc- -3'
miRNA:   3'- uGUUCAGgaaGCCGU--GCGCGUGGUua -5'
13969 3' -54.8 NC_003521.1 + 143524 0.68 0.926897
Target:  5'- uCGGG-CCUgaUCcGCACGCGCGCCGc- -3'
miRNA:   3'- uGUUCaGGA--AGcCGUGCGCGUGGUua -5'
13969 3' -54.8 NC_003521.1 + 70704 0.68 0.926897
Target:  5'- cGCAAG-CUgcgUCGGCGCcUGCGCCGGa -3'
miRNA:   3'- -UGUUCaGGa--AGCCGUGcGCGUGGUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.