miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13969 3' -54.8 NC_003521.1 + 239738 0.67 0.946142
Target:  5'- -gGAGUCCUcuggcuUCGGCcuCGCcCGCCGAUg -3'
miRNA:   3'- ugUUCAGGA------AGCCGu-GCGcGUGGUUA- -5'
13969 3' -54.8 NC_003521.1 + 224078 0.72 0.7306
Target:  5'- ---cGUCCUccggCGGgCGCGCGCGCCGGc -3'
miRNA:   3'- uguuCAGGAa---GCC-GUGCGCGUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 224020 0.68 0.903895
Target:  5'- gGCGGGcCCggcggUCGGgGCGgGCGCCGu- -3'
miRNA:   3'- -UGUUCaGGa----AGCCgUGCgCGUGGUua -5'
13969 3' -54.8 NC_003521.1 + 222178 0.66 0.967268
Target:  5'- aGCAGGUCCgugCGGCcccACGCcacguuguuauuagGCACCu-- -3'
miRNA:   3'- -UGUUCAGGaa-GCCG---UGCG--------------CGUGGuua -5'
13969 3' -54.8 NC_003521.1 + 215931 0.66 0.958153
Target:  5'- ---cGUCCcgCGGCAUggugagguaGCGCACCAu- -3'
miRNA:   3'- uguuCAGGaaGCCGUG---------CGCGUGGUua -5'
13969 3' -54.8 NC_003521.1 + 212090 0.66 0.971114
Target:  5'- cGCGcGUCUgguugUCGGCGUGCGcCACCAu- -3'
miRNA:   3'- -UGUuCAGGa----AGCCGUGCGC-GUGGUua -5'
13969 3' -54.8 NC_003521.1 + 208794 1.05 0.009837
Target:  5'- uACAAGUCCUUCGGCACGCGCACCAAUu -3'
miRNA:   3'- -UGUUCAGGAAGCCGUGCGCGUGGUUA- -5'
13969 3' -54.8 NC_003521.1 + 207944 0.73 0.71093
Target:  5'- gGCAGcaCCggCGGCGCGgGCGCCAAa -3'
miRNA:   3'- -UGUUcaGGaaGCCGUGCgCGUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 206674 0.68 0.915864
Target:  5'- uCAAGgCCUUCGuGCGCGUGgGCCu-- -3'
miRNA:   3'- uGUUCaGGAAGC-CGUGCGCgUGGuua -5'
13969 3' -54.8 NC_003521.1 + 206227 0.71 0.78731
Target:  5'- cACGAGUCCaUCuGCGCGCGcCugCAGc -3'
miRNA:   3'- -UGUUCAGGaAGcCGUGCGC-GugGUUa -5'
13969 3' -54.8 NC_003521.1 + 203679 0.66 0.973843
Target:  5'- aGCAGGUagaagcagaagCCgcgCGGCAuguUGCGCGCCGu- -3'
miRNA:   3'- -UGUUCA-----------GGaa-GCCGU---GCGCGUGGUua -5'
13969 3' -54.8 NC_003521.1 + 203546 0.67 0.936988
Target:  5'- ---uGUCgUagGGCGCGUGCACCGu- -3'
miRNA:   3'- uguuCAGgAagCCGUGCGCGUGGUua -5'
13969 3' -54.8 NC_003521.1 + 201804 0.67 0.941681
Target:  5'- aGCAA-UCCUUCGGCG-GCGC-CCGc- -3'
miRNA:   3'- -UGUUcAGGAAGCCGUgCGCGuGGUua -5'
13969 3' -54.8 NC_003521.1 + 187626 0.66 0.965054
Target:  5'- gGCGAG-CCg--GGC-CGCGCGCCGc- -3'
miRNA:   3'- -UGUUCaGGaagCCGuGCGCGUGGUua -5'
13969 3' -54.8 NC_003521.1 + 181457 0.77 0.463271
Target:  5'- cGCGGcGUCCagCGGCugGCGCGCCGc- -3'
miRNA:   3'- -UGUU-CAGGaaGCCGugCGCGUGGUua -5'
13969 3' -54.8 NC_003521.1 + 179528 0.66 0.958153
Target:  5'- uGCAuGUCCUUggacaGGUGCGCGCggcucagcGCCAAg -3'
miRNA:   3'- -UGUuCAGGAAg----CCGUGCGCG--------UGGUUa -5'
13969 3' -54.8 NC_003521.1 + 178570 0.72 0.768863
Target:  5'- uGCAGGUCCUUCuccaGC-CGCGCGuCCAGc -3'
miRNA:   3'- -UGUUCAGGAAGc---CGuGCGCGU-GGUUa -5'
13969 3' -54.8 NC_003521.1 + 175184 0.7 0.830873
Target:  5'- cCAGGUCCU--GGCugGCGCGCg--- -3'
miRNA:   3'- uGUUCAGGAagCCGugCGCGUGguua -5'
13969 3' -54.8 NC_003521.1 + 167193 0.66 0.973843
Target:  5'- -gGAGgCCUUCugcuugggcuGGCAgGCGCGCCGc- -3'
miRNA:   3'- ugUUCaGGAAG----------CCGUgCGCGUGGUua -5'
13969 3' -54.8 NC_003521.1 + 166171 0.69 0.87722
Target:  5'- cGCAGGgCCgagCGGCGCuccagggucccGCGCACCAc- -3'
miRNA:   3'- -UGUUCaGGaa-GCCGUG-----------CGCGUGGUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.