miRNA display CGI


Results 61 - 80 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13969 5' -54.4 NC_003521.1 + 134213 0.67 0.964251
Target:  5'- aGC-GCUgGUGC-CGcUUGGCCGAGuAGCu -3'
miRNA:   3'- -CGuCGA-CACGuGC-AACUGGCUCcUCG- -5'
13969 5' -54.4 NC_003521.1 + 202112 0.67 0.964251
Target:  5'- cGCAGCUG-GCGCag-GuACCGGGacGGGCu -3'
miRNA:   3'- -CGUCGACaCGUGcaaC-UGGCUC--CUCG- -5'
13969 5' -54.4 NC_003521.1 + 80140 0.67 0.966163
Target:  5'- uGCGGCcggUGcUGCGCGUccagccgcuggagGGCC-AGGAGCa -3'
miRNA:   3'- -CGUCG---AC-ACGUGCAa------------CUGGcUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 240103 0.67 0.970342
Target:  5'- -gGGUUGUGCACGUUG---GGGuGGGCg -3'
miRNA:   3'- cgUCGACACGUGCAACuggCUC-CUCG- -5'
13969 5' -54.4 NC_003521.1 + 208528 0.68 0.940885
Target:  5'- cGCAGCUGU-CugGcccauucGGCCGAGGucacGGCu -3'
miRNA:   3'- -CGUCGACAcGugCaa-----CUGGCUCC----UCG- -5'
13969 5' -54.4 NC_003521.1 + 209853 0.68 0.957334
Target:  5'- cGCAGCUGcUGCuGCGU--GCCGAGcGccuGGCu -3'
miRNA:   3'- -CGUCGAC-ACG-UGCAacUGGCUC-C---UCG- -5'
13969 5' -54.4 NC_003521.1 + 40739 0.68 0.957334
Target:  5'- uGCAGCUGUGUGC--UGG-CGAGGccaAGCc -3'
miRNA:   3'- -CGUCGACACGUGcaACUgGCUCC---UCG- -5'
13969 5' -54.4 NC_003521.1 + 87161 0.68 0.936211
Target:  5'- cGCAGUUcGUGCGCGc-GGCCGuGcAGCg -3'
miRNA:   3'- -CGUCGA-CACGUGCaaCUGGCuCcUCG- -5'
13969 5' -54.4 NC_003521.1 + 166420 0.68 0.953164
Target:  5'- cGCGGCacagGUcguccacGCACGUguaGAUCGAGG-GCg -3'
miRNA:   3'- -CGUCGa---CA-------CGUGCAa--CUGGCUCCuCG- -5'
13969 5' -54.4 NC_003521.1 + 100890 0.68 0.936211
Target:  5'- -gAGCUGgccuuccgGC-CGUgccCCGAGGAGCa -3'
miRNA:   3'- cgUCGACa-------CGuGCAacuGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 165950 0.68 0.953554
Target:  5'- aGCAGCgccgugucGUGCuCGggcaGGCUGAGGaAGCg -3'
miRNA:   3'- -CGUCGa-------CACGuGCaa--CUGGCUCC-UCG- -5'
13969 5' -54.4 NC_003521.1 + 74995 0.68 0.953554
Target:  5'- -gAGCggGUGCGCGUagUGAUCGuGG-GCc -3'
miRNA:   3'- cgUCGa-CACGUGCA--ACUGGCuCCuCG- -5'
13969 5' -54.4 NC_003521.1 + 155173 0.68 0.953554
Target:  5'- aCAGCUGgcgGcCGCGgcuGCCGGGGGGg -3'
miRNA:   3'- cGUCGACa--C-GUGCaacUGGCUCCUCg -5'
13969 5' -54.4 NC_003521.1 + 69417 0.68 0.957334
Target:  5'- -gAGCcuccUGCugGUgGACCG-GGAGCa -3'
miRNA:   3'- cgUCGac--ACGugCAaCUGGCuCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 166223 0.68 0.957334
Target:  5'- gGCGGCgagGCGCGccGGCCGcGGGAcGCc -3'
miRNA:   3'- -CGUCGacaCGUGCaaCUGGC-UCCU-CG- -5'
13969 5' -54.4 NC_003521.1 + 123061 0.68 0.945333
Target:  5'- uGCuGCUGgGacgGCGgcGGCgGAGGAGCu -3'
miRNA:   3'- -CGuCGACaCg--UGCaaCUGgCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 86442 0.68 0.945333
Target:  5'- -uGGCg--GCAgCGgcGACCGAGGAcGCg -3'
miRNA:   3'- cgUCGacaCGU-GCaaCUGGCUCCU-CG- -5'
13969 5' -54.4 NC_003521.1 + 100367 0.68 0.953554
Target:  5'- cGCGGacggGUgacggggacgGCACGgaGGCCGGGGAGa -3'
miRNA:   3'- -CGUCga--CA----------CGUGCaaCUGGCUCCUCg -5'
13969 5' -54.4 NC_003521.1 + 186407 0.68 0.945333
Target:  5'- gGCAGCaGUGCAgGUaGAUC-AGGuAGCa -3'
miRNA:   3'- -CGUCGaCACGUgCAaCUGGcUCC-UCG- -5'
13969 5' -54.4 NC_003521.1 + 12364 0.68 0.945333
Target:  5'- aGCAGCUucuggGUGC-CGUUGugCcaacuauGGGGCg -3'
miRNA:   3'- -CGUCGA-----CACGuGCAACugGcu-----CCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.