Results 41 - 60 of 140 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
13969 | 5' | -54.4 | NC_003521.1 | + | 200239 | 0.66 | 0.984135 |
Target: 5'- cGCAGCgagUGUgGCGCGUguuugccgUGGCCGGGaucgguGAGUc -3' miRNA: 3'- -CGUCG---ACA-CGUGCA--------ACUGGCUC------CUCG- -5' |
|||||||
13969 | 5' | -54.4 | NC_003521.1 | + | 128934 | 0.67 | 0.973091 |
Target: 5'- gGCGGCgcgGaagGUACGUccGAaCGAGGGGCu -3' miRNA: 3'- -CGUCGa--Ca--CGUGCAa-CUgGCUCCUCG- -5' |
|||||||
13969 | 5' | -54.4 | NC_003521.1 | + | 134212 | 0.67 | 0.964251 |
Target: 5'- -aAGCgcugGUGC-CGcUUGGCCGAGuAGCu -3' miRNA: 3'- cgUCGa---CACGuGC-AACUGGCUCcUCG- -5' |
|||||||
13969 | 5' | -54.4 | NC_003521.1 | + | 39876 | 0.67 | 0.970342 |
Target: 5'- -gGGUUGUGCACGUUG---GGGuGGGCg -3' miRNA: 3'- cgUCGACACGUGCAACuggCUC-CUCG- -5' |
|||||||
13969 | 5' | -54.4 | NC_003521.1 | + | 204532 | 0.67 | 0.967397 |
Target: 5'- cGUAGUUGU-CGCGgu--CCGAGGuGCg -3' miRNA: 3'- -CGUCGACAcGUGCaacuGGCUCCuCG- -5' |
|||||||
13969 | 5' | -54.4 | NC_003521.1 | + | 168050 | 0.67 | 0.967397 |
Target: 5'- -gAGCUGUGCcgccgacgGCGggugcucgaGACgCGGGGGGCu -3' miRNA: 3'- cgUCGACACG--------UGCaa-------CUG-GCUCCUCG- -5' |
|||||||
13969 | 5' | -54.4 | NC_003521.1 | + | 121118 | 0.67 | 0.973091 |
Target: 5'- --cGCUGagGCugGUggacGCCGuGGAGCu -3' miRNA: 3'- cguCGACa-CGugCAac--UGGCuCCUCG- -5' |
|||||||
13969 | 5' | -54.4 | NC_003521.1 | + | 173657 | 0.67 | 0.970342 |
Target: 5'- gGCGGC--UGCGCGg-GACCcAGGGGUa -3' miRNA: 3'- -CGUCGacACGUGCaaCUGGcUCCUCG- -5' |
|||||||
13969 | 5' | -54.4 | NC_003521.1 | + | 165119 | 0.67 | 0.960202 |
Target: 5'- gGCGGCUGUgGUGCGgacgggggcugGACCGcGGuGCc -3' miRNA: 3'- -CGUCGACA-CGUGCaa---------CUGGCuCCuCG- -5' |
|||||||
13969 | 5' | -54.4 | NC_003521.1 | + | 102318 | 0.67 | 0.973091 |
Target: 5'- cGCGGCaucgucgucGUGCGCGUgggcgccgacGCCGGGGuGGCg -3' miRNA: 3'- -CGUCGa--------CACGUGCAac--------UGGCUCC-UCG- -5' |
|||||||
13969 | 5' | -54.4 | NC_003521.1 | + | 240103 | 0.67 | 0.970342 |
Target: 5'- -gGGUUGUGCACGUUG---GGGuGGGCg -3' miRNA: 3'- cgUCGACACGUGCAACuggCUC-CUCG- -5' |
|||||||
13969 | 5' | -54.4 | NC_003521.1 | + | 126544 | 0.67 | 0.967397 |
Target: 5'- cCAGCUgugguacucGUGCGCGaaGGCCGuGGGcAGCg -3' miRNA: 3'- cGUCGA---------CACGUGCaaCUGGC-UCC-UCG- -5' |
|||||||
13969 | 5' | -54.4 | NC_003521.1 | + | 80140 | 0.67 | 0.966163 |
Target: 5'- uGCGGCcggUGcUGCGCGUccagccgcuggagGGCC-AGGAGCa -3' miRNA: 3'- -CGUCG---AC-ACGUGCAa------------CUGGcUCCUCG- -5' |
|||||||
13969 | 5' | -54.4 | NC_003521.1 | + | 202112 | 0.67 | 0.964251 |
Target: 5'- cGCAGCUG-GCGCag-GuACCGGGacGGGCu -3' miRNA: 3'- -CGUCGACaCGUGcaaC-UGGCUC--CUCG- -5' |
|||||||
13969 | 5' | -54.4 | NC_003521.1 | + | 134213 | 0.67 | 0.964251 |
Target: 5'- aGC-GCUgGUGC-CGcUUGGCCGAGuAGCu -3' miRNA: 3'- -CGuCGA-CACGuGC-AACUGGCUCcUCG- -5' |
|||||||
13969 | 5' | -54.4 | NC_003521.1 | + | 16571 | 0.67 | 0.960898 |
Target: 5'- -aAGCUGcgccUGCGaGgcGACCGGGGAGg -3' miRNA: 3'- cgUCGAC----ACGUgCaaCUGGCUCCUCg -5' |
|||||||
13969 | 5' | -54.4 | NC_003521.1 | + | 196949 | 0.67 | 0.960898 |
Target: 5'- gGUAGC-GUGgGCGacGGCCcGGGAGCc -3' miRNA: 3'- -CGUCGaCACgUGCaaCUGGcUCCUCG- -5' |
|||||||
13969 | 5' | -54.4 | NC_003521.1 | + | 174670 | 0.67 | 0.967397 |
Target: 5'- uGUuGCUGcGCGCGcugcggGugCGAGGGGUc -3' miRNA: 3'- -CGuCGACaCGUGCaa----CugGCUCCUCG- -5' |
|||||||
13969 | 5' | -54.4 | NC_003521.1 | + | 214576 | 0.67 | 0.960898 |
Target: 5'- aGCAGCgcuggcguuccGUGCGCGa----CGAGGGGCu -3' miRNA: 3'- -CGUCGa----------CACGUGCaacugGCUCCUCG- -5' |
|||||||
13969 | 5' | -54.4 | NC_003521.1 | + | 127774 | 0.67 | 0.964251 |
Target: 5'- aGguGCUGgagcacgGCGCGUuugUGAaaGAGGcGCa -3' miRNA: 3'- -CguCGACa------CGUGCA---ACUggCUCCuCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home