Results 41 - 60 of 140 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
13969 | 5' | -54.4 | NC_003521.1 | + | 89628 | 0.7 | 0.903348 |
Target: 5'- cGUGGUgGUGaC-CGUcgcGGCCGAGGAGCa -3' miRNA: 3'- -CGUCGaCAC-GuGCAa--CUGGCUCCUCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 90836 | 0.7 | 0.905794 |
Target: 5'- uGCGGCggGUGCGCGccgcccgUGcugcugcugaccacgGCCGAGGGGg -3' miRNA: 3'- -CGUCGa-CACGUGCa------AC---------------UGGCUCCUCg -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 91525 | 0.69 | 0.909396 |
Target: 5'- -gAGgUGgGCggaGCGUcGACCGGGGAGCc -3' miRNA: 3'- cgUCgACaCG---UGCAaCUGGCUCCUCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 177755 | 0.69 | 0.909396 |
Target: 5'- cGCAGCUGUacggggucgcGguCGUcgccagGGCCGAcGGGGCc -3' miRNA: 3'- -CGUCGACA----------CguGCAa-----CUGGCU-CCUCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 144898 | 0.69 | 0.909396 |
Target: 5'- uGCuGCgGgcccacgGCAUGccggUGGCCGAGGAGUu -3' miRNA: 3'- -CGuCGaCa------CGUGCa---ACUGGCUCCUCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 121825 | 0.69 | 0.911752 |
Target: 5'- gGUAGUgGUGCACGUUGAugUCGGGcacguucaccaucuuGAGCg -3' miRNA: 3'- -CGUCGaCACGUGCAACU--GGCUC---------------CUCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 165851 | 0.69 | 0.915217 |
Target: 5'- gGCAGgUGUGCugGcgGugCGAGuggaaguugaaGGGCa -3' miRNA: 3'- -CGUCgACACGugCaaCugGCUC-----------CUCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 167912 | 0.69 | 0.915217 |
Target: 5'- gGCAGgUGggGCGCcgcGAUCGAGGGGUa -3' miRNA: 3'- -CGUCgACa-CGUGcaaCUGGCUCCUCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 206124 | 0.69 | 0.924056 |
Target: 5'- uCAGCUGcUGCGCGaugcugagaacgGGCCGGGGAaagGCc -3' miRNA: 3'- cGUCGAC-ACGUGCaa----------CUGGCUCCU---CG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 171420 | 0.69 | 0.926173 |
Target: 5'- aGCAGgaGgcuCACGgugcGAUUGAGGAGCa -3' miRNA: 3'- -CGUCgaCac-GUGCaa--CUGGCUCCUCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 117924 | 0.69 | 0.926173 |
Target: 5'- aCGGCgGUGCGCag-GACgGGGGAGg -3' miRNA: 3'- cGUCGaCACGUGcaaCUGgCUCCUCg -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 196692 | 0.69 | 0.926174 |
Target: 5'- cGCGGCUGuUGCGguagugGUUGGCC-AGGAuGCa -3' miRNA: 3'- -CGUCGAC-ACGUg-----CAACUGGcUCCU-CG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 118686 | 0.69 | 0.929791 |
Target: 5'- gGCGGCgGUaccGCugGUggagggcaggcucaUGGgCGAGGGGCg -3' miRNA: 3'- -CGUCGaCA---CGugCA--------------ACUgGCUCCUCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 92044 | 0.69 | 0.931307 |
Target: 5'- cGCGGCUccucgGCGCGaccGCCGAGG-GCa -3' miRNA: 3'- -CGUCGAca---CGUGCaacUGGCUCCuCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 191620 | 0.69 | 0.931307 |
Target: 5'- uGCuguuuGCUGUGCGCGgcGAagCGAGcgaGAGCu -3' miRNA: 3'- -CGu----CGACACGUGCaaCUg-GCUC---CUCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 87161 | 0.68 | 0.936211 |
Target: 5'- cGCAGUUcGUGCGCGc-GGCCGuGcAGCg -3' miRNA: 3'- -CGUCGA-CACGUGCaaCUGGCuCcUCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 100890 | 0.68 | 0.936211 |
Target: 5'- -gAGCUGgccuuccgGC-CGUgccCCGAGGAGCa -3' miRNA: 3'- cgUCGACa-------CGuGCAacuGGCUCCUCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 109677 | 0.68 | 0.936211 |
Target: 5'- aGCGGCgGaUGCGauc-GGCCGAGGGGUc -3' miRNA: 3'- -CGUCGaC-ACGUgcaaCUGGCUCCUCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 233386 | 0.68 | 0.940885 |
Target: 5'- uGguGCUGUGCgccGCGUccgUGAUgGAacacaGGGGCa -3' miRNA: 3'- -CguCGACACG---UGCA---ACUGgCU-----CCUCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 95554 | 0.68 | 0.940885 |
Target: 5'- cGCgAGCUG-GC-CGccgaGGCCGAGGAGg -3' miRNA: 3'- -CG-UCGACaCGuGCaa--CUGGCUCCUCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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