miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13969 5' -54.4 NC_003521.1 + 137921 0.71 0.831155
Target:  5'- cGUGGCUG-GCGgGUcgcgguucccUGcCCGAGGAGCc -3'
miRNA:   3'- -CGUCGACaCGUgCA----------ACuGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 190567 0.71 0.831155
Target:  5'- uGCAGCggcaGUACGgcgUGAUCGAGG-GCg -3'
miRNA:   3'- -CGUCGaca-CGUGCa--ACUGGCUCCuCG- -5'
13969 5' -54.4 NC_003521.1 + 74632 0.71 0.847183
Target:  5'- aCAGCggggugGUGCGCGg-GACCcuGGAGCg -3'
miRNA:   3'- cGUCGa-----CACGUGCaaCUGGcuCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 57285 0.71 0.847183
Target:  5'- aGCAGCaggucgGUGCGCGgcGACUGGuGGAuaaGCg -3'
miRNA:   3'- -CGUCGa-----CACGUGCaaCUGGCU-CCU---CG- -5'
13969 5' -54.4 NC_003521.1 + 148800 0.71 0.851848
Target:  5'- cGCGGCUgcggacguucaucGUGCGCGgcGaccgccugcccucgGCCGAGGuGCg -3'
miRNA:   3'- -CGUCGA-------------CACGUGCaaC--------------UGGCUCCuCG- -5'
13969 5' -54.4 NC_003521.1 + 215450 0.71 0.854919
Target:  5'- gGguGCUG-GCGCca-GGCCGAgGGAGCc -3'
miRNA:   3'- -CguCGACaCGUGcaaCUGGCU-CCUCG- -5'
13969 5' -54.4 NC_003521.1 + 137310 0.71 0.862462
Target:  5'- cGCGGCUGcUGCGCGgcGACCcc-GAGUu -3'
miRNA:   3'- -CGUCGAC-ACGUGCaaCUGGcucCUCG- -5'
13969 5' -54.4 NC_003521.1 + 60688 0.71 0.862462
Target:  5'- uGCGGCc--GCGCGgggGACCcGGGGGCg -3'
miRNA:   3'- -CGUCGacaCGUGCaa-CUGGcUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 232569 0.71 0.862462
Target:  5'- gGCuGCUGUGUgg--UGAgCGGGGGGCg -3'
miRNA:   3'- -CGuCGACACGugcaACUgGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 76533 0.7 0.869804
Target:  5'- uGUGGCUGcUGCuGCGgUGGCUGuccAGGAGCg -3'
miRNA:   3'- -CGUCGAC-ACG-UGCaACUGGC---UCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 31711 0.7 0.876941
Target:  5'- gGCAGCaUGUGCGCGU--GCUG-GGAcGCc -3'
miRNA:   3'- -CGUCG-ACACGUGCAacUGGCuCCU-CG- -5'
13969 5' -54.4 NC_003521.1 + 151250 0.7 0.876941
Target:  5'- cGCGGcCUG-GgACGgcGACgaCGAGGAGCg -3'
miRNA:   3'- -CGUC-GACaCgUGCaaCUG--GCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 156885 0.7 0.883869
Target:  5'- gGCGGCcGcUGCcCGaUGGCaCGGGGGGCg -3'
miRNA:   3'- -CGUCGaC-ACGuGCaACUG-GCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 155297 0.7 0.88992
Target:  5'- cGCGGCUGUuccucucGCAC----GCCGAGGuGCa -3'
miRNA:   3'- -CGUCGACA-------CGUGcaacUGGCUCCuCG- -5'
13969 5' -54.4 NC_003521.1 + 120926 0.7 0.890581
Target:  5'- uGCGGCUGccCGCGgcGGCggcuccggCGAGGGGCa -3'
miRNA:   3'- -CGUCGACacGUGCaaCUG--------GCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 154644 0.7 0.890581
Target:  5'- uCAGCaa-GCACGUgccgcUGGCCGAGGccGGCa -3'
miRNA:   3'- cGUCGacaCGUGCA-----ACUGGCUCC--UCG- -5'
13969 5' -54.4 NC_003521.1 + 148382 0.7 0.890581
Target:  5'- -gAGCgggGUGCGgGgaGGCUGGGGGGUg -3'
miRNA:   3'- cgUCGa--CACGUgCaaCUGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 221645 0.7 0.897076
Target:  5'- uGCAGCUcGUGCACGUcGGCCacc-AGCg -3'
miRNA:   3'- -CGUCGA-CACGUGCAaCUGGcuccUCG- -5'
13969 5' -54.4 NC_003521.1 + 195170 0.7 0.903348
Target:  5'- aGCGGgUGUGCGCcg-GACCccgcGGAGCc -3'
miRNA:   3'- -CGUCgACACGUGcaaCUGGcu--CCUCG- -5'
13969 5' -54.4 NC_003521.1 + 89628 0.7 0.903348
Target:  5'- cGUGGUgGUGaC-CGUcgcGGCCGAGGAGCa -3'
miRNA:   3'- -CGUCGaCAC-GuGCAa--CUGGCUCCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.