Results 21 - 40 of 140 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13969 | 5' | -54.4 | NC_003521.1 | + | 54162 | 0.66 | 0.978029 |
Target: 5'- -gAGgaGUGCugGggGccccugugucaACCGgAGGAGCa -3' miRNA: 3'- cgUCgaCACGugCaaC-----------UGGC-UCCUCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 56784 | 0.66 | 0.978029 |
Target: 5'- aGCuGCUGUGCGCGagGGCucgCGAcggcaccucGGGGUg -3' miRNA: 3'- -CGuCGACACGUGCaaCUG---GCU---------CCUCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 57285 | 0.71 | 0.847183 |
Target: 5'- aGCAGCaggucgGUGCGCGgcGACUGGuGGAuaaGCg -3' miRNA: 3'- -CGUCGa-----CACGUGCaaCUGGCU-CCU---CG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 60547 | 0.66 | 0.98187 |
Target: 5'- uGCuGCUcaacGUGCGCGccuacuucccccUGcgguacACCGAGGAGCa -3' miRNA: 3'- -CGuCGA----CACGUGCa-----------AC------UGGCUCCUCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 60688 | 0.71 | 0.862462 |
Target: 5'- uGCGGCc--GCGCGgggGACCcGGGGGCg -3' miRNA: 3'- -CGUCGacaCGUGCaa-CUGGcUCCUCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 68191 | 0.72 | 0.814431 |
Target: 5'- -aAGCggggGCGCGUgagGACCGAGGAcGUg -3' miRNA: 3'- cgUCGaca-CGUGCAa--CUGGCUCCU-CG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 69417 | 0.68 | 0.957334 |
Target: 5'- -gAGCcuccUGCugGUgGACCG-GGAGCa -3' miRNA: 3'- cgUCGac--ACGugCAaCUGGCuCCUCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 74632 | 0.71 | 0.847183 |
Target: 5'- aCAGCggggugGUGCGCGg-GACCcuGGAGCg -3' miRNA: 3'- cGUCGa-----CACGUGCaaCUGGcuCCUCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 74995 | 0.68 | 0.953554 |
Target: 5'- -gAGCggGUGCGCGUagUGAUCGuGG-GCc -3' miRNA: 3'- cgUCGa-CACGUGCA--ACUGGCuCCuCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 76533 | 0.7 | 0.869804 |
Target: 5'- uGUGGCUGcUGCuGCGgUGGCUGuccAGGAGCg -3' miRNA: 3'- -CGUCGAC-ACG-UGCaACUGGC---UCCUCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 79196 | 0.66 | 0.981671 |
Target: 5'- gGUGGCgccgaagaaacgcaGCACGUUGcCCGAGG-GCa -3' miRNA: 3'- -CGUCGaca-----------CGUGCAACuGGCUCCuCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 80140 | 0.67 | 0.966163 |
Target: 5'- uGCGGCcggUGcUGCGCGUccagccgcuggagGGCC-AGGAGCa -3' miRNA: 3'- -CGUCG---AC-ACGUGCAa------------CUGGcUCCUCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 80410 | 0.67 | 0.964251 |
Target: 5'- uGCGG-UGUGCGCGgguuucgucACCGGGGAacGCg -3' miRNA: 3'- -CGUCgACACGUGCaac------UGGCUCCU--CG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 86138 | 0.73 | 0.741819 |
Target: 5'- --uGCUGaaggGCACGgUGACCaGGGAGCg -3' miRNA: 3'- cguCGACa---CGUGCaACUGGcUCCUCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 86442 | 0.68 | 0.945333 |
Target: 5'- -uGGCg--GCAgCGgcGACCGAGGAcGCg -3' miRNA: 3'- cgUCGacaCGU-GCaaCUGGCUCCU-CG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 86866 | 0.76 | 0.580228 |
Target: 5'- uGCAagacGCUGUucgacaccaugacgGCGCGgcgggUGGCCGAGGAGUg -3' miRNA: 3'- -CGU----CGACA--------------CGUGCa----ACUGGCUCCUCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 87161 | 0.68 | 0.936211 |
Target: 5'- cGCAGUUcGUGCGCGc-GGCCGuGcAGCg -3' miRNA: 3'- -CGUCGA-CACGUGCaaCUGGCuCcUCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 87260 | 0.77 | 0.537897 |
Target: 5'- aGCGGCUGUGCGcCGUgcgcguggccaacgGGcCCGAGGuGCg -3' miRNA: 3'- -CGUCGACACGU-GCAa-------------CU-GGCUCCuCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 88017 | 0.65 | 0.985688 |
Target: 5'- -gAGCUGUaccaccuGC-CGgUGACCGAGGcgguGCg -3' miRNA: 3'- cgUCGACA-------CGuGCaACUGGCUCCu---CG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 88524 | 0.66 | 0.978029 |
Target: 5'- cGCAGCcGUGCAgGcgcACCGAaacggccuccucGGGGCa -3' miRNA: 3'- -CGUCGaCACGUgCaacUGGCU------------CCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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