miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13969 5' -54.4 NC_003521.1 + 11 0.66 0.984135
Target:  5'- cGCAGCgagUGUgGCGCGUguuugccgUGGCCGGGaucgguGAGUc -3'
miRNA:   3'- -CGUCG---ACA-CGUGCA--------ACUGGCUC------CUCG- -5'
13969 5' -54.4 NC_003521.1 + 417 0.68 0.957334
Target:  5'- uGCAGCUGUGUGC--UGG-CGAGGccaAGCc -3'
miRNA:   3'- -CGUCGACACGUGcaACUgGCUCC---UCG- -5'
13969 5' -54.4 NC_003521.1 + 1885 0.67 0.964251
Target:  5'- cGCAGCUG-GCGCag-GuACCGGGacGGGCu -3'
miRNA:   3'- -CGUCGACaCGUGcaaC-UGGCUC--CUCG- -5'
13969 5' -54.4 NC_003521.1 + 12364 0.68 0.945333
Target:  5'- aGCAGCUucuggGUGC-CGUUGugCcaacuauGGGGCg -3'
miRNA:   3'- -CGUCGA-----CACGuGCAACugGcu-----CCUCG- -5'
13969 5' -54.4 NC_003521.1 + 12913 0.66 0.980231
Target:  5'- aCAGcCUGgcGCugGUggcggGACCagggccggGAGGAGCa -3'
miRNA:   3'- cGUC-GACa-CGugCAa----CUGG--------CUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 14760 0.75 0.633248
Target:  5'- cGCGGCcGggGCGCGccuucgUGGCCGAGGuGCu -3'
miRNA:   3'- -CGUCGaCa-CGUGCa-----ACUGGCUCCuCG- -5'
13969 5' -54.4 NC_003521.1 + 16571 0.67 0.960898
Target:  5'- -aAGCUGcgccUGCGaGgcGACCGGGGAGg -3'
miRNA:   3'- cgUCGAC----ACGUgCaaCUGGCUCCUCg -5'
13969 5' -54.4 NC_003521.1 + 17012 0.66 0.980231
Target:  5'- aGgAGCUGcUGCAacaGcgGGaaGAGGAGCg -3'
miRNA:   3'- -CgUCGAC-ACGUg--CaaCUggCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 17154 0.74 0.693165
Target:  5'- aGCAGCg--GCGCGa-GGCCGAGGcGCa -3'
miRNA:   3'- -CGUCGacaCGUGCaaCUGGCUCCuCG- -5'
13969 5' -54.4 NC_003521.1 + 19667 0.66 0.975652
Target:  5'- gGCAGgUG-GCGCcagaGACCGAGGAa- -3'
miRNA:   3'- -CGUCgACaCGUGcaa-CUGGCUCCUcg -5'
13969 5' -54.4 NC_003521.1 + 20157 0.66 0.980231
Target:  5'- cGCGGCUcaGCAUGgcgaagGACagaGGGAGCg -3'
miRNA:   3'- -CGUCGAcaCGUGCaa----CUGgc-UCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 31711 0.7 0.876941
Target:  5'- gGCAGCaUGUGCGCGU--GCUG-GGAcGCc -3'
miRNA:   3'- -CGUCG-ACACGUGCAacUGGCuCCU-CG- -5'
13969 5' -54.4 NC_003521.1 + 33946 0.7 0.903348
Target:  5'- uGCGGC-GUGCGCGgcGAgCagcuGGAGCg -3'
miRNA:   3'- -CGUCGaCACGUGCaaCUgGcu--CCUCG- -5'
13969 5' -54.4 NC_003521.1 + 35468 0.72 0.805826
Target:  5'- cGCAGgUcGUGCACGgcGcagcugccgccGCCGAGGAGg -3'
miRNA:   3'- -CGUCgA-CACGUGCaaC-----------UGGCUCCUCg -5'
13969 5' -54.4 NC_003521.1 + 38469 0.77 0.563386
Target:  5'- gGCGGCcGUGgGaCGUUGACCaGAGGAGg -3'
miRNA:   3'- -CGUCGaCACgU-GCAACUGG-CUCCUCg -5'
13969 5' -54.4 NC_003521.1 + 38814 0.66 0.980231
Target:  5'- cGCAGCagGUGuCAagguagguuuaGUUGACUGugcguaAGGAGCg -3'
miRNA:   3'- -CGUCGa-CAC-GUg----------CAACUGGC------UCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 39876 0.67 0.970342
Target:  5'- -gGGUUGUGCACGUUG---GGGuGGGCg -3'
miRNA:   3'- cgUCGACACGUGCAACuggCUC-CUCG- -5'
13969 5' -54.4 NC_003521.1 + 40739 0.68 0.957334
Target:  5'- uGCAGCUGUGUGC--UGG-CGAGGccaAGCc -3'
miRNA:   3'- -CGUCGACACGUGcaACUgGCUCC---UCG- -5'
13969 5' -54.4 NC_003521.1 + 46378 0.81 0.365388
Target:  5'- cGCGGCUGUgagggGCGCGggGugCGuGGGGCg -3'
miRNA:   3'- -CGUCGACA-----CGUGCaaCugGCuCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 53587 0.66 0.984135
Target:  5'- cCGGCacccaUGCugG-UGGCCGAaggGGAGCg -3'
miRNA:   3'- cGUCGac---ACGugCaACUGGCU---CCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.