miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13969 5' -54.4 NC_003521.1 + 240560 0.66 0.984135
Target:  5'- cGCAGCgagUGUgGCGCGUguuugccgUGGCCGGGaucgguGAGUc -3'
miRNA:   3'- -CGUCG---ACA-CGUGCA--------ACUGGCUC------CUCG- -5'
13969 5' -54.4 NC_003521.1 + 240103 0.67 0.970342
Target:  5'- -gGGUUGUGCACGUUG---GGGuGGGCg -3'
miRNA:   3'- cgUCGACACGUGCAACuggCUC-CUCG- -5'
13969 5' -54.4 NC_003521.1 + 238696 0.77 0.563386
Target:  5'- gGCGGCcGUGgGaCGUUGACCaGAGGAGg -3'
miRNA:   3'- -CGUCGaCACgU-GCAACUGG-CUCCUCg -5'
13969 5' -54.4 NC_003521.1 + 236476 0.66 0.982264
Target:  5'- aGCGGCgaaccgGUcCGUccgaGACCGAGGAGg -3'
miRNA:   3'- -CGUCGaca---CGuGCAa---CUGGCUCCUCg -5'
13969 5' -54.4 NC_003521.1 + 233386 0.68 0.940885
Target:  5'- uGguGCUGUGCgccGCGUccgUGAUgGAacacaGGGGCa -3'
miRNA:   3'- -CguCGACACG---UGCA---ACUGgCU-----CCUCG- -5'
13969 5' -54.4 NC_003521.1 + 232569 0.71 0.862462
Target:  5'- gGCuGCUGUGUgg--UGAgCGGGGGGCg -3'
miRNA:   3'- -CGuCGACACGugcaACUgGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 224770 0.66 0.97893
Target:  5'- gGCAGUUGUGCagcagcgcccgcaccACGUcGugCG-GGAcGCg -3'
miRNA:   3'- -CGUCGACACG---------------UGCAaCugGCuCCU-CG- -5'
13969 5' -54.4 NC_003521.1 + 221645 0.7 0.897076
Target:  5'- uGCAGCUcGUGCACGUcGGCCacc-AGCg -3'
miRNA:   3'- -CGUCGA-CACGUGCAaCUGGcuccUCG- -5'
13969 5' -54.4 NC_003521.1 + 215450 0.71 0.854919
Target:  5'- gGguGCUG-GCGCca-GGCCGAgGGAGCc -3'
miRNA:   3'- -CguCGACaCGUGcaaCUGGCU-CCUCG- -5'
13969 5' -54.4 NC_003521.1 + 214576 0.67 0.960898
Target:  5'- aGCAGCgcuggcguuccGUGCGCGa----CGAGGGGCu -3'
miRNA:   3'- -CGUCGa----------CACGUGCaacugGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 212808 0.66 0.980231
Target:  5'- cGCGGC-GUGCugGaggagGACagCGAGGuGCc -3'
miRNA:   3'- -CGUCGaCACGugCaa---CUG--GCUCCuCG- -5'
13969 5' -54.4 NC_003521.1 + 210332 0.66 0.975652
Target:  5'- gGCuuaCUGgaaacUGCugGUggUGACgGAGGGGCa -3'
miRNA:   3'- -CGuc-GAC-----ACGugCA--ACUGgCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 209853 0.68 0.957334
Target:  5'- cGCAGCUGcUGCuGCGU--GCCGAGcGccuGGCu -3'
miRNA:   3'- -CGUCGAC-ACG-UGCAacUGGCUC-C---UCG- -5'
13969 5' -54.4 NC_003521.1 + 209564 0.66 0.978029
Target:  5'- gGCGGCgacgGUG-GCGggGGuCCGGGGGcGCa -3'
miRNA:   3'- -CGUCGa---CACgUGCaaCU-GGCUCCU-CG- -5'
13969 5' -54.4 NC_003521.1 + 208861 0.72 0.805826
Target:  5'- uGCGGCUGgacgGCACcauGUgccuguuccUGGaccCCGAGGAGCg -3'
miRNA:   3'- -CGUCGACa---CGUG---CA---------ACU---GGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 208828 1.13 0.003439
Target:  5'- gGCAGCUGUGCACGUUGACCGAGGAGCu -3'
miRNA:   3'- -CGUCGACACGUGCAACUGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 208528 0.68 0.940885
Target:  5'- cGCAGCUGU-CugGcccauucGGCCGAGGucacGGCu -3'
miRNA:   3'- -CGUCGACAcGugCaa-----CUGGCUCC----UCG- -5'
13969 5' -54.4 NC_003521.1 + 206124 0.69 0.924056
Target:  5'- uCAGCUGcUGCGCGaugcugagaacgGGCCGGGGAaagGCc -3'
miRNA:   3'- cGUCGAC-ACGUGCaa----------CUGGCUCCU---CG- -5'
13969 5' -54.4 NC_003521.1 + 204532 0.67 0.967397
Target:  5'- cGUAGUUGU-CGCGgu--CCGAGGuGCg -3'
miRNA:   3'- -CGUCGACAcGUGCaacuGGCUCCuCG- -5'
13969 5' -54.4 NC_003521.1 + 202112 0.67 0.964251
Target:  5'- cGCAGCUG-GCGCag-GuACCGGGacGGGCu -3'
miRNA:   3'- -CGUCGACaCGUGcaaC-UGGCUC--CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.