miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13969 5' -54.4 NC_003521.1 + 88017 0.65 0.985688
Target:  5'- -gAGCUGUaccaccuGC-CGgUGACCGAGGcgguGCg -3'
miRNA:   3'- cgUCGACA-------CGuGCaACUGGCUCCu---CG- -5'
13969 5' -54.4 NC_003521.1 + 60547 0.66 0.98187
Target:  5'- uGCuGCUcaacGUGCGCGccuacuucccccUGcgguacACCGAGGAGCa -3'
miRNA:   3'- -CGuCGA----CACGUGCa-----------AC------UGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 12913 0.66 0.980231
Target:  5'- aCAGcCUGgcGCugGUggcggGACCagggccggGAGGAGCa -3'
miRNA:   3'- cGUC-GACa-CGugCAa----CUGG--------CUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 236476 0.66 0.982264
Target:  5'- aGCGGCgaaccgGUcCGUccgaGACCGAGGAGg -3'
miRNA:   3'- -CGUCGaca---CGuGCAa---CUGGCUCCUCg -5'
13969 5' -54.4 NC_003521.1 + 102659 0.66 0.982264
Target:  5'- aGCGGCUGUcggGCACGUgcuUGAgcaggUCGaAGGGGa -3'
miRNA:   3'- -CGUCGACA---CGUGCA---ACU-----GGC-UCCUCg -5'
13969 5' -54.4 NC_003521.1 + 38814 0.66 0.980231
Target:  5'- cGCAGCagGUGuCAagguagguuuaGUUGACUGugcguaAGGAGCg -3'
miRNA:   3'- -CGUCGa-CAC-GUg----------CAACUGGC------UCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 20157 0.66 0.980231
Target:  5'- cGCGGCUcaGCAUGgcgaagGACagaGGGAGCg -3'
miRNA:   3'- -CGUCGAcaCGUGCaa----CUGgc-UCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 126494 0.66 0.975652
Target:  5'- uGCAGCacguUGggGCAgG-UGGCCGAGuAGCg -3'
miRNA:   3'- -CGUCG----ACa-CGUgCaACUGGCUCcUCG- -5'
13969 5' -54.4 NC_003521.1 + 105975 0.66 0.975652
Target:  5'- cGCAGCgugaagaagccGUGUuCGUUGGgCG-GGGGCa -3'
miRNA:   3'- -CGUCGa----------CACGuGCAACUgGCuCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 17012 0.66 0.980231
Target:  5'- aGgAGCUGcUGCAacaGcgGGaaGAGGAGCg -3'
miRNA:   3'- -CgUCGAC-ACGUg--CaaCUggCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 224770 0.66 0.97893
Target:  5'- gGCAGUUGUGCagcagcgcccgcaccACGUcGugCG-GGAcGCg -3'
miRNA:   3'- -CGUCGACACG---------------UGCAaCugGCuCCU-CG- -5'
13969 5' -54.4 NC_003521.1 + 167103 0.66 0.978029
Target:  5'- -gGGCca-GC-CGggGACUGAGGAGCc -3'
miRNA:   3'- cgUCGacaCGuGCaaCUGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 170523 0.66 0.975652
Target:  5'- aCGGCgUGUG-ACGggGA-CGGGGGGCa -3'
miRNA:   3'- cGUCG-ACACgUGCaaCUgGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 19667 0.66 0.975652
Target:  5'- gGCAGgUG-GCGCcagaGACCGAGGAa- -3'
miRNA:   3'- -CGUCgACaCGUGcaa-CUGGCUCCUcg -5'
13969 5' -54.4 NC_003521.1 + 99896 0.66 0.975652
Target:  5'- aGgGGUcGUGCGgGUUGACCGGuagcccguGGAGg -3'
miRNA:   3'- -CgUCGaCACGUgCAACUGGCU--------CCUCg -5'
13969 5' -54.4 NC_003521.1 + 165871 0.66 0.978029
Target:  5'- cCAGCgGUGCACGU--GCuCGGGcGGCg -3'
miRNA:   3'- cGUCGaCACGUGCAacUG-GCUCcUCG- -5'
13969 5' -54.4 NC_003521.1 + 209564 0.66 0.978029
Target:  5'- gGCGGCgacgGUG-GCGggGGuCCGGGGGcGCa -3'
miRNA:   3'- -CGUCGa---CACgUGCaaCU-GGCUCCU-CG- -5'
13969 5' -54.4 NC_003521.1 + 79196 0.66 0.981671
Target:  5'- gGUGGCgccgaagaaacgcaGCACGUUGcCCGAGG-GCa -3'
miRNA:   3'- -CGUCGaca-----------CGUGCAACuGGCUCCuCG- -5'
13969 5' -54.4 NC_003521.1 + 88524 0.66 0.978029
Target:  5'- cGCAGCcGUGCAgGcgcACCGAaacggccuccucGGGGCa -3'
miRNA:   3'- -CGUCGaCACGUgCaacUGGCU------------CCUCG- -5'
13969 5' -54.4 NC_003521.1 + 170189 0.66 0.978029
Target:  5'- aGCGGUgGUGC-CGguggagguagUGGCaCGAGGGGUc -3'
miRNA:   3'- -CGUCGaCACGuGCa---------ACUG-GCUCCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.