miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13969 5' -54.4 NC_003521.1 + 208828 1.13 0.003439
Target:  5'- gGCAGCUGUGCACGUUGACCGAGGAGCu -3'
miRNA:   3'- -CGUCGACACGUGCAACUGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 46378 0.81 0.365388
Target:  5'- cGCGGCUGUgagggGCGCGggGugCGuGGGGCg -3'
miRNA:   3'- -CGUCGACA-----CGUGCaaCugGCuCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 238696 0.77 0.563386
Target:  5'- gGCGGCcGUGgGaCGUUGACCaGAGGAGg -3'
miRNA:   3'- -CGUCGaCACgU-GCAACUGG-CUCCUCg -5'
13969 5' -54.4 NC_003521.1 + 87260 0.77 0.537897
Target:  5'- aGCGGCUGUGCGcCGUgcgcguggccaacgGGcCCGAGGuGCg -3'
miRNA:   3'- -CGUCGACACGU-GCAa-------------CU-GGCUCCuCG- -5'
13969 5' -54.4 NC_003521.1 + 38469 0.77 0.563386
Target:  5'- gGCGGCcGUGgGaCGUUGACCaGAGGAGg -3'
miRNA:   3'- -CGUCGaCACgU-GCAACUGG-CUCCUCg -5'
13969 5' -54.4 NC_003521.1 + 86866 0.76 0.580228
Target:  5'- uGCAagacGCUGUucgacaccaugacgGCGCGgcgggUGGCCGAGGAGUg -3'
miRNA:   3'- -CGU----CGACA--------------CGUGCa----ACUGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 14760 0.75 0.633248
Target:  5'- cGCGGCcGggGCGCGccuucgUGGCCGAGGuGCu -3'
miRNA:   3'- -CGUCGaCa-CGUGCa-----ACUGGCUCCuCG- -5'
13969 5' -54.4 NC_003521.1 + 17154 0.74 0.693165
Target:  5'- aGCAGCg--GCGCGa-GGCCGAGGcGCa -3'
miRNA:   3'- -CGUCGacaCGUGCaaCUGGCUCCuCG- -5'
13969 5' -54.4 NC_003521.1 + 86138 0.73 0.741819
Target:  5'- --uGCUGaaggGCACGgUGACCaGGGAGCg -3'
miRNA:   3'- cguCGACa---CGUGCaACUGGcUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 136030 0.73 0.741819
Target:  5'- uCAGCgagGUG-GCGgUGAUCGAGGGGCa -3'
miRNA:   3'- cGUCGa--CACgUGCaACUGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 197785 0.73 0.751309
Target:  5'- cGCAGCUGUGC-CGUgaagaccagcUGGuuGAaGAGCg -3'
miRNA:   3'- -CGUCGACACGuGCA----------ACUggCUcCUCG- -5'
13969 5' -54.4 NC_003521.1 + 106558 0.73 0.769053
Target:  5'- aGCAGCUGcagaaccUGCACcggGUcacccUGGCCGAGG-GCg -3'
miRNA:   3'- -CGUCGAC-------ACGUG---CA-----ACUGGCUCCuCG- -5'
13969 5' -54.4 NC_003521.1 + 68191 0.72 0.814431
Target:  5'- -aAGCggggGCGCGUgagGACCGAGGAcGUg -3'
miRNA:   3'- cgUCGaca-CGUGCAa--CUGGCUCCU-CG- -5'
13969 5' -54.4 NC_003521.1 + 110482 0.72 0.79707
Target:  5'- uGCGGCc--GCACGUUGAgcCCGAaGAGCa -3'
miRNA:   3'- -CGUCGacaCGUGCAACU--GGCUcCUCG- -5'
13969 5' -54.4 NC_003521.1 + 208861 0.72 0.805826
Target:  5'- uGCGGCUGgacgGCACcauGUgccuguuccUGGaccCCGAGGAGCg -3'
miRNA:   3'- -CGUCGACa---CGUG---CA---------ACU---GGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 177545 0.72 0.822876
Target:  5'- aGCAGCUGcUGCACccgGucGCCGAGGAa- -3'
miRNA:   3'- -CGUCGAC-ACGUGcaaC--UGGCUCCUcg -5'
13969 5' -54.4 NC_003521.1 + 127595 0.72 0.822876
Target:  5'- aGUAGCUGUGCGCGaaGGCCaGuAGGcuGCg -3'
miRNA:   3'- -CGUCGACACGUGCaaCUGG-C-UCCu-CG- -5'
13969 5' -54.4 NC_003521.1 + 100129 0.72 0.814431
Target:  5'- cGCGGCUGgcgGUccuGCGggaaGGCCGuGGGGCu -3'
miRNA:   3'- -CGUCGACa--CG---UGCaa--CUGGCuCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 35468 0.72 0.805826
Target:  5'- cGCAGgUcGUGCACGgcGcagcugccgccGCCGAGGAGg -3'
miRNA:   3'- -CGUCgA-CACGUGCaaC-----------UGGCUCCUCg -5'
13969 5' -54.4 NC_003521.1 + 137310 0.71 0.862462
Target:  5'- cGCGGCUGcUGCGCGgcGACCcc-GAGUu -3'
miRNA:   3'- -CGUCGAC-ACGUGCaaCUGGcucCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.