Results 41 - 60 of 140 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13969 | 5' | -54.4 | NC_003521.1 | + | 89628 | 0.7 | 0.903348 |
Target: 5'- cGUGGUgGUGaC-CGUcgcGGCCGAGGAGCa -3' miRNA: 3'- -CGUCGaCAC-GuGCAa--CUGGCUCCUCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 90836 | 0.7 | 0.905794 |
Target: 5'- uGCGGCggGUGCGCGccgcccgUGcugcugcugaccacgGCCGAGGGGg -3' miRNA: 3'- -CGUCGa-CACGUGCa------AC---------------UGGCUCCUCg -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 91525 | 0.69 | 0.909396 |
Target: 5'- -gAGgUGgGCggaGCGUcGACCGGGGAGCc -3' miRNA: 3'- cgUCgACaCG---UGCAaCUGGCUCCUCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 91970 | 0.71 | 0.829513 |
Target: 5'- cGUAGCUggcgcgGUGCACGgcacgcaccucGGCCGAGG-GCa -3' miRNA: 3'- -CGUCGA------CACGUGCaa---------CUGGCUCCuCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 92044 | 0.69 | 0.931307 |
Target: 5'- cGCGGCUccucgGCGCGaccGCCGAGG-GCa -3' miRNA: 3'- -CGUCGAca---CGUGCaacUGGCUCCuCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 95554 | 0.68 | 0.940885 |
Target: 5'- cGCgAGCUG-GC-CGccgaGGCCGAGGAGg -3' miRNA: 3'- -CG-UCGACaCGuGCaa--CUGGCUCCUCg -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 99896 | 0.66 | 0.975652 |
Target: 5'- aGgGGUcGUGCGgGUUGACCGGuagcccguGGAGg -3' miRNA: 3'- -CgUCGaCACGUgCAACUGGCU--------CCUCg -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 100129 | 0.72 | 0.814431 |
Target: 5'- cGCGGCUGgcgGUccuGCGggaaGGCCGuGGGGCu -3' miRNA: 3'- -CGUCGACa--CG---UGCaa--CUGGCuCCUCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 100367 | 0.68 | 0.953554 |
Target: 5'- cGCGGacggGUgacggggacgGCACGgaGGCCGGGGAGa -3' miRNA: 3'- -CGUCga--CA----------CGUGCaaCUGGCUCCUCg -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 100890 | 0.68 | 0.936211 |
Target: 5'- -gAGCUGgccuuccgGC-CGUgccCCGAGGAGCa -3' miRNA: 3'- cgUCGACa-------CGuGCAacuGGCUCCUCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 102318 | 0.67 | 0.973091 |
Target: 5'- cGCGGCaucgucgucGUGCGCGUgggcgccgacGCCGGGGuGGCg -3' miRNA: 3'- -CGUCGa--------CACGUGCAac--------UGGCUCC-UCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 102659 | 0.66 | 0.982264 |
Target: 5'- aGCGGCUGUcggGCACGUgcuUGAgcaggUCGaAGGGGa -3' miRNA: 3'- -CGUCGACA---CGUGCA---ACU-----GGC-UCCUCg -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 105975 | 0.66 | 0.975652 |
Target: 5'- cGCAGCgugaagaagccGUGUuCGUUGGgCG-GGGGCa -3' miRNA: 3'- -CGUCGa----------CACGuGCAACUgGCuCCUCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 106558 | 0.73 | 0.769053 |
Target: 5'- aGCAGCUGcagaaccUGCACcggGUcacccUGGCCGAGG-GCg -3' miRNA: 3'- -CGUCGAC-------ACGUG---CA-----ACUGGCUCCuCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 109677 | 0.68 | 0.936211 |
Target: 5'- aGCGGCgGaUGCGauc-GGCCGAGGGGUc -3' miRNA: 3'- -CGUCGaC-ACGUgcaaCUGGCUCCUCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 110482 | 0.72 | 0.79707 |
Target: 5'- uGCGGCc--GCACGUUGAgcCCGAaGAGCa -3' miRNA: 3'- -CGUCGacaCGUGCAACU--GGCUcCUCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 111776 | 0.66 | 0.977568 |
Target: 5'- aGguGCUGcGCGCGcucaagaacacGGCCGAcgccauGGAGCg -3' miRNA: 3'- -CguCGACaCGUGCaa---------CUGGCU------CCUCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 117924 | 0.69 | 0.926173 |
Target: 5'- aCGGCgGUGCGCag-GACgGGGGAGg -3' miRNA: 3'- cGUCGaCACGUGcaaCUGgCUCCUCg -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 118686 | 0.69 | 0.929791 |
Target: 5'- gGCGGCgGUaccGCugGUggagggcaggcucaUGGgCGAGGGGCg -3' miRNA: 3'- -CGUCGaCA---CGugCA--------------ACUgGCUCCUCG- -5' |
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13969 | 5' | -54.4 | NC_003521.1 | + | 120926 | 0.7 | 0.890581 |
Target: 5'- uGCGGCUGccCGCGgcGGCggcuccggCGAGGGGCa -3' miRNA: 3'- -CGUCGACacGUGCaaCUG--------GCUCCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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