miRNA display CGI


Results 41 - 60 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13969 5' -54.4 NC_003521.1 + 19667 0.66 0.975652
Target:  5'- gGCAGgUG-GCGCcagaGACCGAGGAa- -3'
miRNA:   3'- -CGUCgACaCGUGcaa-CUGGCUCCUcg -5'
13969 5' -54.4 NC_003521.1 + 102318 0.67 0.973091
Target:  5'- cGCGGCaucgucgucGUGCGCGUgggcgccgacGCCGGGGuGGCg -3'
miRNA:   3'- -CGUCGa--------CACGUGCAac--------UGGCUCC-UCG- -5'
13969 5' -54.4 NC_003521.1 + 121118 0.67 0.973091
Target:  5'- --cGCUGagGCugGUggacGCCGuGGAGCu -3'
miRNA:   3'- cguCGACa-CGugCAac--UGGCuCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 128934 0.67 0.973091
Target:  5'- gGCGGCgcgGaagGUACGUccGAaCGAGGGGCu -3'
miRNA:   3'- -CGUCGa--Ca--CGUGCAa-CUgGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 39876 0.67 0.970342
Target:  5'- -gGGUUGUGCACGUUG---GGGuGGGCg -3'
miRNA:   3'- cgUCGACACGUGCAACuggCUC-CUCG- -5'
13969 5' -54.4 NC_003521.1 + 240103 0.67 0.970342
Target:  5'- -gGGUUGUGCACGUUG---GGGuGGGCg -3'
miRNA:   3'- cgUCGACACGUGCAACuggCUC-CUCG- -5'
13969 5' -54.4 NC_003521.1 + 173657 0.67 0.970342
Target:  5'- gGCGGC--UGCGCGg-GACCcAGGGGUa -3'
miRNA:   3'- -CGUCGacACGUGCaaCUGGcUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 174670 0.67 0.967397
Target:  5'- uGUuGCUGcGCGCGcugcggGugCGAGGGGUc -3'
miRNA:   3'- -CGuCGACaCGUGCaa----CugGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 204532 0.67 0.967397
Target:  5'- cGUAGUUGU-CGCGgu--CCGAGGuGCg -3'
miRNA:   3'- -CGUCGACAcGUGCaacuGGCUCCuCG- -5'
13969 5' -54.4 NC_003521.1 + 199594 0.67 0.967397
Target:  5'- cCAGCaGUGCugGUUG-CUGAGcacgaugaaGGGCa -3'
miRNA:   3'- cGUCGaCACGugCAACuGGCUC---------CUCG- -5'
13969 5' -54.4 NC_003521.1 + 168050 0.67 0.967397
Target:  5'- -gAGCUGUGCcgccgacgGCGggugcucgaGACgCGGGGGGCu -3'
miRNA:   3'- cgUCGACACG--------UGCaa-------CUG-GCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 126544 0.67 0.967397
Target:  5'- cCAGCUgugguacucGUGCGCGaaGGCCGuGGGcAGCg -3'
miRNA:   3'- cGUCGA---------CACGUGCaaCUGGC-UCC-UCG- -5'
13969 5' -54.4 NC_003521.1 + 80140 0.67 0.966163
Target:  5'- uGCGGCcggUGcUGCGCGUccagccgcuggagGGCC-AGGAGCa -3'
miRNA:   3'- -CGUCG---AC-ACGUGCAa------------CUGGcUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 134212 0.67 0.964251
Target:  5'- -aAGCgcugGUGC-CGcUUGGCCGAGuAGCu -3'
miRNA:   3'- cgUCGa---CACGuGC-AACUGGCUCcUCG- -5'
13969 5' -54.4 NC_003521.1 + 1885 0.67 0.964251
Target:  5'- cGCAGCUG-GCGCag-GuACCGGGacGGGCu -3'
miRNA:   3'- -CGUCGACaCGUGcaaC-UGGCUC--CUCG- -5'
13969 5' -54.4 NC_003521.1 + 127774 0.67 0.964251
Target:  5'- aGguGCUGgagcacgGCGCGUuugUGAaaGAGGcGCa -3'
miRNA:   3'- -CguCGACa------CGUGCA---ACUggCUCCuCG- -5'
13969 5' -54.4 NC_003521.1 + 202112 0.67 0.964251
Target:  5'- cGCAGCUG-GCGCag-GuACCGGGacGGGCu -3'
miRNA:   3'- -CGUCGACaCGUGcaaC-UGGCUC--CUCG- -5'
13969 5' -54.4 NC_003521.1 + 134213 0.67 0.964251
Target:  5'- aGC-GCUgGUGC-CGcUUGGCCGAGuAGCu -3'
miRNA:   3'- -CGuCGA-CACGuGC-AACUGGCUCcUCG- -5'
13969 5' -54.4 NC_003521.1 + 80410 0.67 0.964251
Target:  5'- uGCGG-UGUGCGCGgguuucgucACCGGGGAacGCg -3'
miRNA:   3'- -CGUCgACACGUGCaac------UGGCUCCU--CG- -5'
13969 5' -54.4 NC_003521.1 + 197608 0.67 0.964251
Target:  5'- uGCGGCgucugGUGCA-GcaGGCCGAuGAGCa -3'
miRNA:   3'- -CGUCGa----CACGUgCaaCUGGCUcCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.