miRNA display CGI


Results 61 - 80 of 140 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13969 5' -54.4 NC_003521.1 + 196949 0.67 0.960898
Target:  5'- gGUAGC-GUGgGCGacGGCCcGGGAGCc -3'
miRNA:   3'- -CGUCGaCACgUGCaaCUGGcUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 16571 0.67 0.960898
Target:  5'- -aAGCUGcgccUGCGaGgcGACCGGGGAGg -3'
miRNA:   3'- cgUCGAC----ACGUgCaaCUGGCUCCUCg -5'
13969 5' -54.4 NC_003521.1 + 214576 0.67 0.960898
Target:  5'- aGCAGCgcuggcguuccGUGCGCGa----CGAGGGGCu -3'
miRNA:   3'- -CGUCGa----------CACGUGCaacugGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 165119 0.67 0.960202
Target:  5'- gGCGGCUGUgGUGCGgacgggggcugGACCGcGGuGCc -3'
miRNA:   3'- -CGUCGACA-CGUGCaa---------CUGGCuCCuCG- -5'
13969 5' -54.4 NC_003521.1 + 209853 0.68 0.957334
Target:  5'- cGCAGCUGcUGCuGCGU--GCCGAGcGccuGGCu -3'
miRNA:   3'- -CGUCGAC-ACG-UGCAacUGGCUC-C---UCG- -5'
13969 5' -54.4 NC_003521.1 + 417 0.68 0.957334
Target:  5'- uGCAGCUGUGUGC--UGG-CGAGGccaAGCc -3'
miRNA:   3'- -CGUCGACACGUGcaACUgGCUCC---UCG- -5'
13969 5' -54.4 NC_003521.1 + 40739 0.68 0.957334
Target:  5'- uGCAGCUGUGUGC--UGG-CGAGGccaAGCc -3'
miRNA:   3'- -CGUCGACACGUGcaACUgGCUCC---UCG- -5'
13969 5' -54.4 NC_003521.1 + 166638 0.68 0.957334
Target:  5'- aGCAGCUGuUGCugGU--GCCGuagcgacGGuAGCg -3'
miRNA:   3'- -CGUCGAC-ACGugCAacUGGCu------CC-UCG- -5'
13969 5' -54.4 NC_003521.1 + 166223 0.68 0.957334
Target:  5'- gGCGGCgagGCGCGccGGCCGcGGGAcGCc -3'
miRNA:   3'- -CGUCGacaCGUGCaaCUGGC-UCCU-CG- -5'
13969 5' -54.4 NC_003521.1 + 69417 0.68 0.957334
Target:  5'- -gAGCcuccUGCugGUgGACCG-GGAGCa -3'
miRNA:   3'- cgUCGac--ACGugCAaCUGGCuCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 100367 0.68 0.953554
Target:  5'- cGCGGacggGUgacggggacgGCACGgaGGCCGGGGAGa -3'
miRNA:   3'- -CGUCga--CA----------CGUGCaaCUGGCUCCUCg -5'
13969 5' -54.4 NC_003521.1 + 165950 0.68 0.953554
Target:  5'- aGCAGCgccgugucGUGCuCGggcaGGCUGAGGaAGCg -3'
miRNA:   3'- -CGUCGa-------CACGuGCaa--CUGGCUCC-UCG- -5'
13969 5' -54.4 NC_003521.1 + 155173 0.68 0.953554
Target:  5'- aCAGCUGgcgGcCGCGgcuGCCGGGGGGg -3'
miRNA:   3'- cGUCGACa--C-GUGCaacUGGCUCCUCg -5'
13969 5' -54.4 NC_003521.1 + 74995 0.68 0.953554
Target:  5'- -gAGCggGUGCGCGUagUGAUCGuGG-GCc -3'
miRNA:   3'- cgUCGa-CACGUGCA--ACUGGCuCCuCG- -5'
13969 5' -54.4 NC_003521.1 + 166420 0.68 0.953164
Target:  5'- cGCGGCacagGUcguccacGCACGUguaGAUCGAGG-GCg -3'
miRNA:   3'- -CGUCGa---CA-------CGUGCAa--CUGGCUCCuCG- -5'
13969 5' -54.4 NC_003521.1 + 123061 0.68 0.945333
Target:  5'- uGCuGCUGgGacgGCGgcGGCgGAGGAGCu -3'
miRNA:   3'- -CGuCGACaCg--UGCaaCUGgCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 12364 0.68 0.945333
Target:  5'- aGCAGCUucuggGUGC-CGUUGugCcaacuauGGGGCg -3'
miRNA:   3'- -CGUCGA-----CACGuGCAACugGcu-----CCUCG- -5'
13969 5' -54.4 NC_003521.1 + 86442 0.68 0.945333
Target:  5'- -uGGCg--GCAgCGgcGACCGAGGAcGCg -3'
miRNA:   3'- cgUCGacaCGU-GCaaCUGGCUCCU-CG- -5'
13969 5' -54.4 NC_003521.1 + 186407 0.68 0.945333
Target:  5'- gGCAGCaGUGCAgGUaGAUC-AGGuAGCa -3'
miRNA:   3'- -CGUCGaCACGUgCAaCUGGcUCC-UCG- -5'
13969 5' -54.4 NC_003521.1 + 233386 0.68 0.940885
Target:  5'- uGguGCUGUGCgccGCGUccgUGAUgGAacacaGGGGCa -3'
miRNA:   3'- -CguCGACACG---UGCA---ACUGgCU-----CCUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.