miRNA display CGI


Results 61 - 80 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13969 5' -54.4 NC_003521.1 + 121118 0.67 0.973091
Target:  5'- --cGCUGagGCugGUggacGCCGuGGAGCu -3'
miRNA:   3'- cguCGACa-CGugCAac--UGGCuCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 121825 0.69 0.911752
Target:  5'- gGUAGUgGUGCACGUUGAugUCGGGcacguucaccaucuuGAGCg -3'
miRNA:   3'- -CGUCGaCACGUGCAACU--GGCUC---------------CUCG- -5'
13969 5' -54.4 NC_003521.1 + 123061 0.68 0.945333
Target:  5'- uGCuGCUGgGacgGCGgcGGCgGAGGAGCu -3'
miRNA:   3'- -CGuCGACaCg--UGCaaCUGgCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 126494 0.66 0.975652
Target:  5'- uGCAGCacguUGggGCAgG-UGGCCGAGuAGCg -3'
miRNA:   3'- -CGUCG----ACa-CGUgCaACUGGCUCcUCG- -5'
13969 5' -54.4 NC_003521.1 + 126544 0.67 0.967397
Target:  5'- cCAGCUgugguacucGUGCGCGaaGGCCGuGGGcAGCg -3'
miRNA:   3'- cGUCGA---------CACGUGCaaCUGGC-UCC-UCG- -5'
13969 5' -54.4 NC_003521.1 + 127595 0.72 0.822876
Target:  5'- aGUAGCUGUGCGCGaaGGCCaGuAGGcuGCg -3'
miRNA:   3'- -CGUCGACACGUGCaaCUGG-C-UCCu-CG- -5'
13969 5' -54.4 NC_003521.1 + 127774 0.67 0.964251
Target:  5'- aGguGCUGgagcacgGCGCGUuugUGAaaGAGGcGCa -3'
miRNA:   3'- -CguCGACa------CGUGCA---ACUggCUCCuCG- -5'
13969 5' -54.4 NC_003521.1 + 128934 0.67 0.973091
Target:  5'- gGCGGCgcgGaagGUACGUccGAaCGAGGGGCu -3'
miRNA:   3'- -CGUCGa--Ca--CGUGCAa-CUgGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 131226 0.66 0.975652
Target:  5'- -gGGcCUGUGCuCGcUGGCCGAGcuGGCg -3'
miRNA:   3'- cgUC-GACACGuGCaACUGGCUCc-UCG- -5'
13969 5' -54.4 NC_003521.1 + 134212 0.67 0.964251
Target:  5'- -aAGCgcugGUGC-CGcUUGGCCGAGuAGCu -3'
miRNA:   3'- cgUCGa---CACGuGC-AACUGGCUCcUCG- -5'
13969 5' -54.4 NC_003521.1 + 134213 0.67 0.964251
Target:  5'- aGC-GCUgGUGC-CGcUUGGCCGAGuAGCu -3'
miRNA:   3'- -CGuCGA-CACGuGC-AACUGGCUCcUCG- -5'
13969 5' -54.4 NC_003521.1 + 136030 0.73 0.741819
Target:  5'- uCAGCgagGUG-GCGgUGAUCGAGGGGCa -3'
miRNA:   3'- cGUCGa--CACgUGCaACUGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 137310 0.71 0.862462
Target:  5'- cGCGGCUGcUGCGCGgcGACCcc-GAGUu -3'
miRNA:   3'- -CGUCGAC-ACGUGCaaCUGGcucCUCG- -5'
13969 5' -54.4 NC_003521.1 + 137921 0.71 0.831155
Target:  5'- cGUGGCUG-GCGgGUcgcgguucccUGcCCGAGGAGCc -3'
miRNA:   3'- -CGUCGACaCGUgCA----------ACuGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 144898 0.69 0.909396
Target:  5'- uGCuGCgGgcccacgGCAUGccggUGGCCGAGGAGUu -3'
miRNA:   3'- -CGuCGaCa------CGUGCa---ACUGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 145031 0.66 0.984135
Target:  5'- cGC-GCUGgauCGCG-UGGCCGAGcGGCa -3'
miRNA:   3'- -CGuCGACac-GUGCaACUGGCUCcUCG- -5'
13969 5' -54.4 NC_003521.1 + 148382 0.7 0.890581
Target:  5'- -gAGCgggGUGCGgGgaGGCUGGGGGGUg -3'
miRNA:   3'- cgUCGa--CACGUgCaaCUGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 148800 0.71 0.851848
Target:  5'- cGCGGCUgcggacguucaucGUGCGCGgcGaccgccugcccucgGCCGAGGuGCg -3'
miRNA:   3'- -CGUCGA-------------CACGUGCaaC--------------UGGCUCCuCG- -5'
13969 5' -54.4 NC_003521.1 + 148878 0.66 0.982264
Target:  5'- cCAGcCUGgccucgGC-CGUggccgacGCCGAGGAGCg -3'
miRNA:   3'- cGUC-GACa-----CGuGCAac-----UGGCUCCUCG- -5'
13969 5' -54.4 NC_003521.1 + 150628 0.66 0.982264
Target:  5'- gGCGGCUGcUGCGCa--GGCgGGGGcguGCg -3'
miRNA:   3'- -CGUCGAC-ACGUGcaaCUGgCUCCu--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.