miRNA display CGI


Results 41 - 60 of 143 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13970 5' -62.8 NC_003521.1 + 182263 0.66 0.682925
Target:  5'- aGCCGUgaUUGGcuugagGUACUGCguGCCCGCg- -3'
miRNA:   3'- gCGGCG--AACCa-----CGUGGCG--CGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 180929 0.66 0.682925
Target:  5'- gGCCGCUcgaUGGUgGCGCgGUGCcguaguCCGCg- -3'
miRNA:   3'- gCGGCGA---ACCA-CGUGgCGCG------GGCGau -5'
13970 5' -62.8 NC_003521.1 + 68353 0.66 0.682925
Target:  5'- cCGCCGac-GGcGCACCGCuGCCgGCc- -3'
miRNA:   3'- -GCGGCgaaCCaCGUGGCG-CGGgCGau -5'
13970 5' -62.8 NC_003521.1 + 14947 0.66 0.682925
Target:  5'- gCGCCagacgcGCaUGGaGCACCGCaccuguGCCCGCa- -3'
miRNA:   3'- -GCGG------CGaACCaCGUGGCG------CGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 185743 0.66 0.681974
Target:  5'- uCGCCGagcgGGUGCGCCggaGCGCcuaggggCCGCg- -3'
miRNA:   3'- -GCGGCgaa-CCACGUGG---CGCG-------GGCGau -5'
13970 5' -62.8 NC_003521.1 + 6708 0.66 0.681974
Target:  5'- gCGCUGCUgggucucgccgUGGUGCagggccugacgcaGCCaGCGCUCGCc- -3'
miRNA:   3'- -GCGGCGA-----------ACCACG-------------UGG-CGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 200116 0.66 0.673402
Target:  5'- gCGCCGCgaugUGGUGCAUCuCaCCgGCUu -3'
miRNA:   3'- -GCGGCGa---ACCACGUGGcGcGGgCGAu -5'
13970 5' -62.8 NC_003521.1 + 20386 0.66 0.673402
Target:  5'- gGCUGCg-GGUGUacGCCGUGCUCGUc- -3'
miRNA:   3'- gCGGCGaaCCACG--UGGCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 120913 0.66 0.673402
Target:  5'- gGCUGCUUGcGUuuGCgGCuGCCCGCg- -3'
miRNA:   3'- gCGGCGAAC-CAcgUGgCG-CGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 125862 0.66 0.673402
Target:  5'- gCGCC--UUGGUG-GCCGCGUCCGUg- -3'
miRNA:   3'- -GCGGcgAACCACgUGGCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 44149 0.66 0.673402
Target:  5'- aGCCGCgacauccUGGUGgACCuGCGCaCCcaGCUGg -3'
miRNA:   3'- gCGGCGa------ACCACgUGG-CGCG-GG--CGAU- -5'
13970 5' -62.8 NC_003521.1 + 29475 0.66 0.673402
Target:  5'- gGCUGCUgcgGGaccccaacCACuCGCGCCCGCg- -3'
miRNA:   3'- gCGGCGAa--CCac------GUG-GCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 70700 0.67 0.663849
Target:  5'- gCGCCGCaaGcUGCGuCgGCGCCUGCg- -3'
miRNA:   3'- -GCGGCGaaCcACGU-GgCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 12666 0.67 0.663849
Target:  5'- gCGCUacaaguGgUUGGUGCGCCGCGaCCgGUUc -3'
miRNA:   3'- -GCGG------CgAACCACGUGGCGC-GGgCGAu -5'
13970 5' -62.8 NC_003521.1 + 130360 0.67 0.663849
Target:  5'- gGCCGCag---GCGCCGUGCgCGCUc -3'
miRNA:   3'- gCGGCGaaccaCGUGGCGCGgGCGAu -5'
13970 5' -62.8 NC_003521.1 + 14228 0.67 0.663849
Target:  5'- aCGCCGC-UGGgcuaCGCCGUGauCCUGCUGc -3'
miRNA:   3'- -GCGGCGaACCac--GUGGCGC--GGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 63628 0.67 0.660978
Target:  5'- gCGCCGCcUGGagaaGUACCGCacgcgcaaccccguGCCCGUg- -3'
miRNA:   3'- -GCGGCGaACCa---CGUGGCG--------------CGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 124964 0.67 0.660978
Target:  5'- gGCCGUguuugacgagGcGUGCGCCGCccgccugagccagcGCCUGCUGa -3'
miRNA:   3'- gCGGCGaa--------C-CACGUGGCG--------------CGGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 180112 0.67 0.654274
Target:  5'- aGCgGCgUGGUGCGacCCGCG-CCGCc- -3'
miRNA:   3'- gCGgCGaACCACGU--GGCGCgGGCGau -5'
13970 5' -62.8 NC_003521.1 + 104184 0.67 0.654274
Target:  5'- uCGCCGCc----GCcCCGCGCCCGUg- -3'
miRNA:   3'- -GCGGCGaaccaCGuGGCGCGGGCGau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.