Results 21 - 40 of 143 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13970 | 5' | -62.8 | NC_003521.1 | + | 119208 | 0.66 | 0.701853 |
Target: 5'- gCGCUGCgccaggUGGUgaGCGCCagccagcugguGUGCUCGCUGg -3' miRNA: 3'- -GCGGCGa-----ACCA--CGUGG-----------CGCGGGCGAU- -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 86111 | 0.66 | 0.701853 |
Target: 5'- aGCCGCUggaUGGUGUucuCCuCGCgCGCg- -3' miRNA: 3'- gCGGCGA---ACCACGu--GGcGCGgGCGau -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 185094 | 0.66 | 0.701853 |
Target: 5'- cCGCgCGC-UGGgagGCGCUGCGCgCCGaCa- -3' miRNA: 3'- -GCG-GCGaACCa--CGUGGCGCG-GGC-Gau -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 103963 | 0.66 | 0.701853 |
Target: 5'- cCGCCGCgaguccGUGCAuuuCUGCGUCUGCa- -3' miRNA: 3'- -GCGGCGaac---CACGU---GGCGCGGGCGau -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 104968 | 0.66 | 0.701853 |
Target: 5'- uGCCGCggGG-GCGCCGCGagaCGUc- -3' miRNA: 3'- gCGGCGaaCCaCGUGGCGCgg-GCGau -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 17694 | 0.66 | 0.700911 |
Target: 5'- gGCCaacugGCUccUGGUGCugCGCGagacggccgccauCCCGCa- -3' miRNA: 3'- gCGG-----CGA--ACCACGugGCGC-------------GGGCGau -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 223800 | 0.66 | 0.700911 |
Target: 5'- gGCCGCcagacgacgGGccUGCGCCGCcgccaccgcgggcGCCUGCUGu -3' miRNA: 3'- gCGGCGaa-------CC--ACGUGGCG-------------CGGGCGAU- -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 169518 | 0.66 | 0.700911 |
Target: 5'- cCGCCGCcccaggugcUGGUGCcccaggggcccguGCCGCGgccCCCGCc- -3' miRNA: 3'- -GCGGCGa--------ACCACG-------------UGGCGC---GGGCGau -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 124455 | 0.66 | 0.700911 |
Target: 5'- gGCCGCggcGGcacGCguucgccGCCGCGCUCGCg- -3' miRNA: 3'- gCGGCGaa-CCa--CG-------UGGCGCGGGCGau -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 103554 | 0.66 | 0.692411 |
Target: 5'- gGUCGCUgGG-GCccCCGCucuGCCCGCUGc -3' miRNA: 3'- gCGGCGAaCCaCGu-GGCG---CGGGCGAU- -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 171528 | 0.66 | 0.692411 |
Target: 5'- gCGCCGCccugugucgGG-GCugCGCGCUgGUUAa -3' miRNA: 3'- -GCGGCGaa-------CCaCGugGCGCGGgCGAU- -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 88065 | 0.66 | 0.692411 |
Target: 5'- gGUCGCggUGGUcgGCgGCGCCCGUg- -3' miRNA: 3'- gCGGCGa-ACCAcgUGgCGCGGGCGau -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 152355 | 0.66 | 0.692411 |
Target: 5'- aCGCUGCUcUGGggccggccgggGCGgCGCGCCCuCUAc -3' miRNA: 3'- -GCGGCGA-ACCa----------CGUgGCGCGGGcGAU- -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 4351 | 0.66 | 0.692411 |
Target: 5'- cCGCCGCcggcGGUucgcucaucgcgGC-CCGCGuCCCGCUc -3' miRNA: 3'- -GCGGCGaa--CCA------------CGuGGCGC-GGGCGAu -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 198798 | 0.66 | 0.692411 |
Target: 5'- aGCUGCgUGGUGCcgGCgGCGUCUGUc- -3' miRNA: 3'- gCGGCGaACCACG--UGgCGCGGGCGau -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 87113 | 0.66 | 0.692411 |
Target: 5'- uGCCGC-UGGUGgACgCGCGUCC-Ca- -3' miRNA: 3'- gCGGCGaACCACgUG-GCGCGGGcGau -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 129300 | 0.66 | 0.690517 |
Target: 5'- gGUCGUggaacuugaugGcGUGCGCCGCcgccgccaGCCCGCUGg -3' miRNA: 3'- gCGGCGaa---------C-CACGUGGCG--------CGGGCGAU- -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 180929 | 0.66 | 0.682925 |
Target: 5'- gGCCGCUcgaUGGUgGCGCgGUGCcguaguCCGCg- -3' miRNA: 3'- gCGGCGA---ACCA-CGUGgCGCG------GGCGau -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 110320 | 0.66 | 0.682925 |
Target: 5'- aGCCGCa-GG-GCcaucaugacgcgGCCGCGCUCGCg- -3' miRNA: 3'- gCGGCGaaCCaCG------------UGGCGCGGGCGau -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 127028 | 0.66 | 0.682925 |
Target: 5'- aCGCCGCcgcGGUGCccgUCGCGCUgGCc- -3' miRNA: 3'- -GCGGCGaa-CCACGu--GGCGCGGgCGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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