miRNA display CGI


Results 21 - 40 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13970 5' -62.8 NC_003521.1 + 43561 0.66 0.711244
Target:  5'- cCGCCGCcg---GCGCCGCGUcaagcaCCGCUc -3'
miRNA:   3'- -GCGGCGaaccaCGUGGCGCG------GGCGAu -5'
13970 5' -62.8 NC_003521.1 + 44149 0.66 0.673402
Target:  5'- aGCCGCgacauccUGGUGgACCuGCGCaCCcaGCUGg -3'
miRNA:   3'- gCGGCGa------ACCACgUGG-CGCG-GG--CGAU- -5'
13970 5' -62.8 NC_003521.1 + 59095 0.67 0.644683
Target:  5'- gGCCGCUUGGc-CAgCGUGCgCGCg- -3'
miRNA:   3'- gCGGCGAACCacGUgGCGCGgGCGau -5'
13970 5' -62.8 NC_003521.1 + 63628 0.67 0.660978
Target:  5'- gCGCCGCcUGGagaaGUACCGCacgcgcaaccccguGCCCGUg- -3'
miRNA:   3'- -GCGGCGaACCa---CGUGGCG--------------CGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 64997 0.73 0.318719
Target:  5'- gCGCCGCUUcuUGgACCGCGCCC-CUAg -3'
miRNA:   3'- -GCGGCGAAccACgUGGCGCGGGcGAU- -5'
13970 5' -62.8 NC_003521.1 + 68353 0.66 0.682925
Target:  5'- cCGCCGac-GGcGCACCGCuGCCgGCc- -3'
miRNA:   3'- -GCGGCgaaCCaCGUGGCG-CGGgCGau -5'
13970 5' -62.8 NC_003521.1 + 70700 0.67 0.663849
Target:  5'- gCGCCGCaaGcUGCGuCgGCGCCUGCg- -3'
miRNA:   3'- -GCGGCGaaCcACGU-GgCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 72010 0.66 0.701853
Target:  5'- gGCCcaGCUUcaGGaUGCGCCGCgugGCCUGCa- -3'
miRNA:   3'- gCGG--CGAA--CC-ACGUGGCG---CGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 72248 0.68 0.586229
Target:  5'- cCGCCGCUgGGUcaGCCGCcaccuuacccgcaGCCCGCc- -3'
miRNA:   3'- -GCGGCGAaCCAcgUGGCG-------------CGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 72985 0.66 0.711244
Target:  5'- gGCCGCggGGgGCcugGCCGCuCCUGCUc -3'
miRNA:   3'- gCGGCGaaCCaCG---UGGCGcGGGCGAu -5'
13970 5' -62.8 NC_003521.1 + 74169 0.68 0.568181
Target:  5'- uGCCGC-UGGccgacUGCGCCgcgGCGCCCGg-- -3'
miRNA:   3'- gCGGCGaACC-----ACGUGG---CGCGGGCgau -5'
13970 5' -62.8 NC_003521.1 + 74554 0.69 0.530692
Target:  5'- aGCCGCgccGUGCG-CGUGCCCGUg- -3'
miRNA:   3'- gCGGCGaacCACGUgGCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 74660 0.67 0.625482
Target:  5'- gCGCCGCUcg--GCcCUGCGCUCGCUc -3'
miRNA:   3'- -GCGGCGAaccaCGuGGCGCGGGCGAu -5'
13970 5' -62.8 NC_003521.1 + 77037 0.69 0.539987
Target:  5'- gGCCgGCggUGGUgGCGCCGCuaCCGUUGu -3'
miRNA:   3'- gCGG-CGa-ACCA-CGUGGCGcgGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 77448 0.69 0.503176
Target:  5'- uGCCGCcgUUGGUGCccgugacacuGCCGC-CgCCGCUGc -3'
miRNA:   3'- gCGGCG--AACCACG----------UGGCGcG-GGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 77498 0.67 0.635083
Target:  5'- cCGCCGCUa-GUGcCGCuCGCGCC-GCUGa -3'
miRNA:   3'- -GCGGCGAacCAC-GUG-GCGCGGgCGAU- -5'
13970 5' -62.8 NC_003521.1 + 77636 0.67 0.625482
Target:  5'- cCGCCGCcac---CACCGUGUCCGCUGc -3'
miRNA:   3'- -GCGGCGaaccacGUGGCGCGGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 80140 0.68 0.558736
Target:  5'- uGCgGCc-GGUGCugCGCGUccagCCGCUGg -3'
miRNA:   3'- gCGgCGaaCCACGugGCGCG----GGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 85474 0.7 0.450154
Target:  5'- gGUCGUcgUGGUGC-CgGUGCCCGCg- -3'
miRNA:   3'- gCGGCGa-ACCACGuGgCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 86111 0.66 0.701853
Target:  5'- aGCCGCUggaUGGUGUucuCCuCGCgCGCg- -3'
miRNA:   3'- gCGGCGA---ACCACGu--GGcGCGgGCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.