Results 21 - 40 of 143 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13970 | 5' | -62.8 | NC_003521.1 | + | 98829 | 0.7 | 0.467499 |
Target: 5'- aGCUGCUUGGcGCggGCCaGCuCCCGCUGc -3' miRNA: 3'- gCGGCGAACCaCG--UGG-CGcGGGCGAU- -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 176052 | 0.7 | 0.476299 |
Target: 5'- aGgCGCUUGGgaucgcccgGUGCCGCGCCgGCc- -3' miRNA: 3'- gCgGCGAACCa--------CGUGGCGCGGgCGau -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 163429 | 0.7 | 0.476299 |
Target: 5'- uGCCGCUgccuaccagGGUGcCACCGUcuucgaGCCCGUg- -3' miRNA: 3'- gCGGCGAa--------CCAC-GUGGCG------CGGGCGau -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 105331 | 0.7 | 0.476299 |
Target: 5'- uCGCCGCUUucGGUuuuaugugcGCGCCacuGCGUCCGCg- -3' miRNA: 3'- -GCGGCGAA--CCA---------CGUGG---CGCGGGCGau -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 18903 | 0.7 | 0.479842 |
Target: 5'- gCGCCGCggcagccccgaagGGUgGCGCCGCGCgCCGg-- -3' miRNA: 3'- -GCGGCGaa-----------CCA-CGUGGCGCG-GGCgau -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 134221 | 0.7 | 0.485181 |
Target: 5'- uGCCGCUUGGccgaguagcUGC-CCGCG-CCGCc- -3' miRNA: 3'- gCGGCGAACC---------ACGuGGCGCgGGCGau -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 124118 | 0.69 | 0.494141 |
Target: 5'- gCGUCGCUgUGGUGauuCC-CGCCCGCg- -3' miRNA: 3'- -GCGGCGA-ACCACgu-GGcGCGGGCGau -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 98162 | 0.69 | 0.494141 |
Target: 5'- uCGCUGCUgacgGCGCUGCGCcgaCCGCUGa -3' miRNA: 3'- -GCGGCGAaccaCGUGGCGCG---GGCGAU- -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 15668 | 0.69 | 0.503176 |
Target: 5'- gCGCCGaggUGGUGCgcgACUGgGUCCGCa- -3' miRNA: 3'- -GCGGCga-ACCACG---UGGCgCGGGCGau -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 77448 | 0.69 | 0.503176 |
Target: 5'- uGCCGCcgUUGGUGCccgugacacuGCCGC-CgCCGCUGc -3' miRNA: 3'- gCGGCG--AACCACG----------UGGCGcG-GGCGAU- -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 13937 | 0.69 | 0.512282 |
Target: 5'- gGCCGCcgUGGUGCccCCGCagcuGCCCucGCUGg -3' miRNA: 3'- gCGGCGa-ACCACGu-GGCG----CGGG--CGAU- -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 122558 | 0.69 | 0.512282 |
Target: 5'- cCGCCGC-UGGUGC-CgGCuaCCGCg- -3' miRNA: 3'- -GCGGCGaACCACGuGgCGcgGGCGau -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 14689 | 0.69 | 0.512282 |
Target: 5'- cCGCCGCUggUGGUgggGCAuCCGCGCCaacCUGu -3' miRNA: 3'- -GCGGCGA--ACCA---CGU-GGCGCGGgc-GAU- -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 117409 | 0.69 | 0.512282 |
Target: 5'- cCGCCGUc-GGU--GCCGUGCCCGCg- -3' miRNA: 3'- -GCGGCGaaCCAcgUGGCGCGGGCGau -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 233034 | 0.69 | 0.521455 |
Target: 5'- uGCCGCUucgagcgcUGGUGUaaggcucgucuGCgGCGUCUGCUGg -3' miRNA: 3'- gCGGCGA--------ACCACG-----------UGgCGCGGGCGAU- -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 144211 | 0.69 | 0.521455 |
Target: 5'- aGCUGCagcaGUGCGCCGaCGCCUGCc- -3' miRNA: 3'- gCGGCGaac-CACGUGGC-GCGGGCGau -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 108112 | 0.69 | 0.521455 |
Target: 5'- cCGUCGcCUUGGaccaGUGCCGCGuCCCGCc- -3' miRNA: 3'- -GCGGC-GAACCa---CGUGGCGC-GGGCGau -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 212360 | 0.69 | 0.530692 |
Target: 5'- -cCCGC-UGGUGCACCGC-CCaagGCUGg -3' miRNA: 3'- gcGGCGaACCACGUGGCGcGGg--CGAU- -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 74554 | 0.69 | 0.530692 |
Target: 5'- aGCCGCgccGUGCG-CGUGCCCGUg- -3' miRNA: 3'- gCGGCGaacCACGUgGCGCGGGCGau -5' |
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13970 | 5' | -62.8 | NC_003521.1 | + | 176802 | 0.69 | 0.530692 |
Target: 5'- gGUCGa-UGGUGCGCUccaGCGCCUGCa- -3' miRNA: 3'- gCGGCgaACCACGUGG---CGCGGGCGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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