miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13970 5' -62.8 NC_003521.1 + 208685 1.06 0.001727
Target:  5'- cCGCCGCUUGGUGCACCGCGCCCGCUAc -3'
miRNA:   3'- -GCGGCGAACCACGUGGCGCGGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 137500 0.79 0.129489
Target:  5'- gCGCCGCgaGGUcugggacgugcaGCGCCGCGUCCGCUu -3'
miRNA:   3'- -GCGGCGaaCCA------------CGUGGCGCGGGCGAu -5'
13970 5' -62.8 NC_003521.1 + 137973 0.78 0.142673
Target:  5'- uGCCGacgUGGUGCGCUGUGUCCGCg- -3'
miRNA:   3'- gCGGCga-ACCACGUGGCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 32888 0.78 0.160874
Target:  5'- gCGCCGCc-GGUGCugccGCCGUGCCCGCc- -3'
miRNA:   3'- -GCGGCGaaCCACG----UGGCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 150682 0.77 0.176916
Target:  5'- gCGCCGCUgcugcugGGUGCuGCUGCGCCgGCg- -3'
miRNA:   3'- -GCGGCGAa------CCACG-UGGCGCGGgCGau -5'
13970 5' -62.8 NC_003521.1 + 164426 0.76 0.20364
Target:  5'- cCGCCGC-UGGUGCuagcagcgccACCGCGgCCGCg- -3'
miRNA:   3'- -GCGGCGaACCACG----------UGGCGCgGGCGau -5'
13970 5' -62.8 NC_003521.1 + 198727 0.74 0.261136
Target:  5'- gCGCgGgCUUGGUGCcagacgaggucuuGCCGUGCUCGCUGg -3'
miRNA:   3'- -GCGgC-GAACCACG-------------UGGCGCGGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 35133 0.74 0.272418
Target:  5'- uCGCCGCgacugagcgcgGGUGCGCCacGCGCCCGg-- -3'
miRNA:   3'- -GCGGCGaa---------CCACGUGG--CGCGGGCgau -5'
13970 5' -62.8 NC_003521.1 + 187410 0.74 0.279743
Target:  5'- cCGCUGCUcGGUgGCGcCCGaCGCCCGCa- -3'
miRNA:   3'- -GCGGCGAaCCA-CGU-GGC-GCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 117657 0.73 0.301346
Target:  5'- gCGCCGCgagacGGUGCGCCGgcccuucuuuuccgaCGCgCCGCUGc -3'
miRNA:   3'- -GCGGCGaa---CCACGUGGC---------------GCG-GGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 64997 0.73 0.318719
Target:  5'- gCGCCGCUUcuUGgACCGCGCCC-CUAg -3'
miRNA:   3'- -GCGGCGAAccACgUGGCGCGGGcGAU- -5'
13970 5' -62.8 NC_003521.1 + 233140 0.72 0.339686
Target:  5'- uCGCCaccgacaacucuGCUUGG-GCACCGCuGUCCGCg- -3'
miRNA:   3'- -GCGG------------CGAACCaCGUGGCG-CGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 129967 0.72 0.339686
Target:  5'- gGCCGCUgcucuacGUGCACCGuCGCugCCGCUGc -3'
miRNA:   3'- gCGGCGAac-----CACGUGGC-GCG--GGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 187442 0.71 0.384551
Target:  5'- aGCUGCagaagcUGGUGCGCCGCGUCaGCg- -3'
miRNA:   3'- gCGGCGa-----ACCACGUGGCGCGGgCGau -5'
13970 5' -62.8 NC_003521.1 + 148843 0.71 0.400353
Target:  5'- gGCCGaggUGcgugccGUGCACCGCGCCaGCUAc -3'
miRNA:   3'- gCGGCga-AC------CACGUGGCGCGGgCGAU- -5'
13970 5' -62.8 NC_003521.1 + 233380 0.71 0.400353
Target:  5'- -cCCGCgUGGUGCugugcGCCGCGUCCGUg- -3'
miRNA:   3'- gcGGCGaACCACG-----UGGCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 116899 0.71 0.400353
Target:  5'- gCGCCGCUgcaacUGGUggagaacaGCGCCGCGCgCCGaCa- -3'
miRNA:   3'- -GCGGCGA-----ACCA--------CGUGGCGCG-GGC-Gau -5'
13970 5' -62.8 NC_003521.1 + 138914 0.71 0.43317
Target:  5'- gGCCGCUcGGUGCGCC-UGCCCu--- -3'
miRNA:   3'- gCGGCGAaCCACGUGGcGCGGGcgau -5'
13970 5' -62.8 NC_003521.1 + 85474 0.7 0.450154
Target:  5'- gGUCGUcgUGGUGC-CgGUGCCCGCg- -3'
miRNA:   3'- gCGGCGa-ACCACGuGgCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 136734 0.7 0.467499
Target:  5'- gCGCCGCcuuccGCguccuGCCGCGCCCGCUc -3'
miRNA:   3'- -GCGGCGaaccaCG-----UGGCGCGGGCGAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.