miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13970 5' -62.8 NC_003521.1 + 4351 0.66 0.692411
Target:  5'- cCGCCGCcggcGGUucgcucaucgcgGC-CCGCGuCCCGCUc -3'
miRNA:   3'- -GCGGCGaa--CCA------------CGuGGCGC-GGGCGAu -5'
13970 5' -62.8 NC_003521.1 + 6685 0.67 0.635083
Target:  5'- uGCUGCa-GG-GC-CUGCGCCCGCg- -3'
miRNA:   3'- gCGGCGaaCCaCGuGGCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 6708 0.66 0.681974
Target:  5'- gCGCUGCUgggucucgccgUGGUGCagggccugacgcaGCCaGCGCUCGCc- -3'
miRNA:   3'- -GCGGCGA-----------ACCACG-------------UGG-CGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 8464 0.67 0.615884
Target:  5'- -uCCGCUUcgcGGUGcCGCCGCGaCUGCUGc -3'
miRNA:   3'- gcGGCGAA---CCAC-GUGGCGCgGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 12666 0.67 0.663849
Target:  5'- gCGCUacaaguGgUUGGUGCGCCGCGaCCgGUUc -3'
miRNA:   3'- -GCGG------CgAACCACGUGGCGC-GGgCGAu -5'
13970 5' -62.8 NC_003521.1 + 13937 0.69 0.512282
Target:  5'- gGCCGCcgUGGUGCccCCGCagcuGCCCucGCUGg -3'
miRNA:   3'- gCGGCGa-ACCACGu-GGCG----CGGG--CGAU- -5'
13970 5' -62.8 NC_003521.1 + 14228 0.67 0.663849
Target:  5'- aCGCCGC-UGGgcuaCGCCGUGauCCUGCUGc -3'
miRNA:   3'- -GCGGCGaACCac--GUGGCGC--GGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 14689 0.69 0.512282
Target:  5'- cCGCCGCUggUGGUgggGCAuCCGCGCCaacCUGu -3'
miRNA:   3'- -GCGGCGA--ACCA---CGU-GGCGCGGgc-GAU- -5'
13970 5' -62.8 NC_003521.1 + 14947 0.66 0.682925
Target:  5'- gCGCCagacgcGCaUGGaGCACCGCaccuguGCCCGCa- -3'
miRNA:   3'- -GCGG------CGaACCaCGUGGCG------CGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 15668 0.69 0.503176
Target:  5'- gCGCCGaggUGGUGCgcgACUGgGUCCGCa- -3'
miRNA:   3'- -GCGGCga-ACCACG---UGGCgCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 17418 0.68 0.577664
Target:  5'- aCGCCGCgccgGG-GCGCCacacgGCCCGCg- -3'
miRNA:   3'- -GCGGCGaa--CCaCGUGGcg---CGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 17694 0.66 0.700911
Target:  5'- gGCCaacugGCUccUGGUGCugCGCGagacggccgccauCCCGCa- -3'
miRNA:   3'- gCGG-----CGA--ACCACGugGCGC-------------GGGCGau -5'
13970 5' -62.8 NC_003521.1 + 18156 0.68 0.584323
Target:  5'- cCGCUGCUcaugcugggcagcgUGGaggcGCugCGCGCCUGCc- -3'
miRNA:   3'- -GCGGCGA--------------ACCa---CGugGCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 18903 0.7 0.479842
Target:  5'- gCGCCGCggcagccccgaagGGUgGCGCCGCGCgCCGg-- -3'
miRNA:   3'- -GCGGCGaa-----------CCA-CGUGGCGCG-GGCgau -5'
13970 5' -62.8 NC_003521.1 + 20386 0.66 0.673402
Target:  5'- gGCUGCg-GGUGUacGCCGUGCUCGUc- -3'
miRNA:   3'- gCGGCGaaCCACG--UGGCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 21654 0.68 0.568181
Target:  5'- aGCCGCcacUGGaacacGCugCgGCGCCUGCUGg -3'
miRNA:   3'- gCGGCGa--ACCa----CGugG-CGCGGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 29475 0.66 0.673402
Target:  5'- gGCUGCUgcgGGaccccaacCACuCGCGCCCGCg- -3'
miRNA:   3'- gCGGCGAa--CCac------GUG-GCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 32140 0.69 0.539987
Target:  5'- gGgCGC--GGUGCACCaagcggcggaagGCGCCCGCg- -3'
miRNA:   3'- gCgGCGaaCCACGUGG------------CGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 32888 0.78 0.160874
Target:  5'- gCGCCGCc-GGUGCugccGCCGUGCCCGCc- -3'
miRNA:   3'- -GCGGCGaaCCACG----UGGCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 35133 0.74 0.272418
Target:  5'- uCGCCGCgacugagcgcgGGUGCGCCacGCGCCCGg-- -3'
miRNA:   3'- -GCGGCGaa---------CCACGUGG--CGCGGGCgau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.