miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13970 5' -62.8 NC_003521.1 + 233380 0.71 0.400353
Target:  5'- -cCCGCgUGGUGCugugcGCCGCGUCCGUg- -3'
miRNA:   3'- gcGGCGaACCACG-----UGGCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 233140 0.72 0.339686
Target:  5'- uCGCCaccgacaacucuGCUUGG-GCACCGCuGUCCGCg- -3'
miRNA:   3'- -GCGG------------CGAACCaCGUGGCG-CGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 233034 0.69 0.521455
Target:  5'- uGCCGCUucgagcgcUGGUGUaaggcucgucuGCgGCGUCUGCUGg -3'
miRNA:   3'- gCGGCGA--------ACCACG-----------UGgCGCGGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 224528 0.66 0.720575
Target:  5'- aGCCGCcgGGccgguagGCACCccgGCGCCCaGCa- -3'
miRNA:   3'- gCGGCGaaCCa------CGUGG---CGCGGG-CGau -5'
13970 5' -62.8 NC_003521.1 + 223800 0.66 0.700911
Target:  5'- gGCCGCcagacgacgGGccUGCGCCGCcgccaccgcgggcGCCUGCUGu -3'
miRNA:   3'- gCGGCGaa-------CC--ACGUGGCG-------------CGGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 216820 0.67 0.60534
Target:  5'- aCGCCGgaUGGcGCGCaggagguCGCaGCCCGCg- -3'
miRNA:   3'- -GCGGCgaACCaCGUG-------GCG-CGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 213802 0.67 0.615884
Target:  5'- gCGCCGCgccUGGaGCcucgguuucgauGCCGUGgCCCGCUu -3'
miRNA:   3'- -GCGGCGa--ACCaCG------------UGGCGC-GGGCGAu -5'
13970 5' -62.8 NC_003521.1 + 212360 0.69 0.530692
Target:  5'- -cCCGC-UGGUGCACCGC-CCaagGCUGg -3'
miRNA:   3'- gcGGCGaACCACGUGGCGcGGg--CGAU- -5'
13970 5' -62.8 NC_003521.1 + 210030 0.67 0.635083
Target:  5'- gGCC-CUcGGUGCgcuACCGCGCCCa--- -3'
miRNA:   3'- gCGGcGAaCCACG---UGGCGCGGGcgau -5'
13970 5' -62.8 NC_003521.1 + 209383 0.67 0.634123
Target:  5'- aCGCCGUgcUGGcGCugCGCaucauccGCCUGCUGc -3'
miRNA:   3'- -GCGGCGa-ACCaCGugGCG-------CGGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 208685 1.06 0.001727
Target:  5'- cCGCCGCUUGGUGCACCGCGCCCGCUAc -3'
miRNA:   3'- -GCGGCGAACCACGUGGCGCGGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 206298 0.66 0.711244
Target:  5'- uCGCCGCUcGcGcgucucgGC-CCGCGgCCGCUAc -3'
miRNA:   3'- -GCGGCGAaC-Ca------CGuGGCGCgGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 205908 0.69 0.539987
Target:  5'- gCGCCGCUaccUGcUGCGCUucgaggGCGCCUGCg- -3'
miRNA:   3'- -GCGGCGA---ACcACGUGG------CGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 205783 0.67 0.606298
Target:  5'- gCGCCGCacGGcaugagcgUGCccaACCGCGUCCGCc- -3'
miRNA:   3'- -GCGGCGaaCC--------ACG---UGGCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 200309 0.66 0.711244
Target:  5'- uCGCCGCUgcUGGaggaguucgagaUGCGCUGCGgCgCCGUg- -3'
miRNA:   3'- -GCGGCGA--ACC------------ACGUGGCGC-G-GGCGau -5'
13970 5' -62.8 NC_003521.1 + 200116 0.66 0.673402
Target:  5'- gCGCCGCgaugUGGUGCAUCuCaCCgGCUu -3'
miRNA:   3'- -GCGGCGa---ACCACGUGGcGcGGgCGAu -5'
13970 5' -62.8 NC_003521.1 + 198798 0.66 0.692411
Target:  5'- aGCUGCgUGGUGCcgGCgGCGUCUGUc- -3'
miRNA:   3'- gCGGCGaACCACG--UGgCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 198727 0.74 0.261136
Target:  5'- gCGCgGgCUUGGUGCcagacgaggucuuGCCGUGCUCGCUGg -3'
miRNA:   3'- -GCGgC-GAACCACG-------------UGGCGCGGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 197343 0.66 0.711244
Target:  5'- cCGCCGCggccagcacGGc-CGCCGCgcugGCCCGCUGu -3'
miRNA:   3'- -GCGGCGaa-------CCacGUGGCG----CGGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 196332 0.68 0.558736
Target:  5'- gGCCGgUUGuUGCGCUGCGUCaCGUUGg -3'
miRNA:   3'- gCGGCgAACcACGUGGCGCGG-GCGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.