miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13970 5' -62.8 NC_003521.1 + 80140 0.68 0.558736
Target:  5'- uGCgGCc-GGUGCugCGCGUccagCCGCUGg -3'
miRNA:   3'- gCGgCGaaCCACGugGCGCG----GGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 134221 0.7 0.485181
Target:  5'- uGCCGCUUGGccgaguagcUGC-CCGCG-CCGCc- -3'
miRNA:   3'- gCGGCGAACC---------ACGuGGCGCgGGCGau -5'
13970 5' -62.8 NC_003521.1 + 124118 0.69 0.494141
Target:  5'- gCGUCGCUgUGGUGauuCC-CGCCCGCg- -3'
miRNA:   3'- -GCGGCGA-ACCACgu-GGcGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 77448 0.69 0.503176
Target:  5'- uGCCGCcgUUGGUGCccgugacacuGCCGC-CgCCGCUGc -3'
miRNA:   3'- gCGGCG--AACCACG----------UGGCGcG-GGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 117409 0.69 0.512282
Target:  5'- cCGCCGUc-GGU--GCCGUGCCCGCg- -3'
miRNA:   3'- -GCGGCGaaCCAcgUGGCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 144211 0.69 0.521455
Target:  5'- aGCUGCagcaGUGCGCCGaCGCCUGCc- -3'
miRNA:   3'- gCGGCGaac-CACGUGGC-GCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 233034 0.69 0.521455
Target:  5'- uGCCGCUucgagcgcUGGUGUaaggcucgucuGCgGCGUCUGCUGg -3'
miRNA:   3'- gCGGCGA--------ACCACG-----------UGgCGCGGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 212360 0.69 0.530692
Target:  5'- -cCCGC-UGGUGCACCGC-CCaagGCUGg -3'
miRNA:   3'- gcGGCGaACCACGUGGCGcGGg--CGAU- -5'
13970 5' -62.8 NC_003521.1 + 32140 0.69 0.539987
Target:  5'- gGgCGC--GGUGCACCaagcggcggaagGCGCCCGCg- -3'
miRNA:   3'- gCgGCGaaCCACGUGG------------CGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 136734 0.7 0.467499
Target:  5'- gCGCCGCcuuccGCguccuGCCGCGCCCGCUc -3'
miRNA:   3'- -GCGGCGaaccaCG-----UGGCGCGGGCGAu -5'
13970 5' -62.8 NC_003521.1 + 85474 0.7 0.450154
Target:  5'- gGUCGUcgUGGUGC-CgGUGCCCGCg- -3'
miRNA:   3'- gCGGCGa-ACCACGuGgCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 148843 0.71 0.400353
Target:  5'- gGCCGaggUGcgugccGUGCACCGCGCCaGCUAc -3'
miRNA:   3'- gCGGCga-AC------CACGUGGCGCGGgCGAU- -5'
13970 5' -62.8 NC_003521.1 + 137973 0.78 0.142673
Target:  5'- uGCCGacgUGGUGCGCUGUGUCCGCg- -3'
miRNA:   3'- gCGGCga-ACCACGUGGCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 32888 0.78 0.160874
Target:  5'- gCGCCGCc-GGUGCugccGCCGUGCCCGCc- -3'
miRNA:   3'- -GCGGCGaaCCACG----UGGCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 150682 0.77 0.176916
Target:  5'- gCGCCGCUgcugcugGGUGCuGCUGCGCCgGCg- -3'
miRNA:   3'- -GCGGCGAa------CCACG-UGGCGCGGgCGau -5'
13970 5' -62.8 NC_003521.1 + 164426 0.76 0.20364
Target:  5'- cCGCCGC-UGGUGCuagcagcgccACCGCGgCCGCg- -3'
miRNA:   3'- -GCGGCGaACCACG----------UGGCGCgGGCGau -5'
13970 5' -62.8 NC_003521.1 + 35133 0.74 0.272418
Target:  5'- uCGCCGCgacugagcgcgGGUGCGCCacGCGCCCGg-- -3'
miRNA:   3'- -GCGGCGaa---------CCACGUGG--CGCGGGCgau -5'
13970 5' -62.8 NC_003521.1 + 64997 0.73 0.318719
Target:  5'- gCGCCGCUUcuUGgACCGCGCCC-CUAg -3'
miRNA:   3'- -GCGGCGAAccACgUGGCGCGGGcGAU- -5'
13970 5' -62.8 NC_003521.1 + 129967 0.72 0.339686
Target:  5'- gGCCGCUgcucuacGUGCACCGuCGCugCCGCUGc -3'
miRNA:   3'- gCGGCGAac-----CACGUGGC-GCG--GGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 233140 0.72 0.339686
Target:  5'- uCGCCaccgacaacucuGCUUGG-GCACCGCuGUCCGCg- -3'
miRNA:   3'- -GCGG------------CGAACCaCGUGGCG-CGGGCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.