miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13970 5' -62.8 NC_003521.1 + 208685 1.06 0.001727
Target:  5'- cCGCCGCUUGGUGCACCGCGCCCGCUAc -3'
miRNA:   3'- -GCGGCGAACCACGUGGCGCGGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 122558 0.69 0.512282
Target:  5'- cCGCCGC-UGGUGC-CgGCuaCCGCg- -3'
miRNA:   3'- -GCGGCGaACCACGuGgCGcgGGCGau -5'
13970 5' -62.8 NC_003521.1 + 74554 0.69 0.530692
Target:  5'- aGCCGCgccGUGCG-CGUGCCCGUg- -3'
miRNA:   3'- gCGGCGaacCACGUgGCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 125429 0.66 0.720575
Target:  5'- gGCCGUggcGGccGC-CCGCGCCCuGCa- -3'
miRNA:   3'- gCGGCGaa-CCa-CGuGGCGCGGG-CGau -5'
13970 5' -62.8 NC_003521.1 + 187442 0.71 0.384551
Target:  5'- aGCUGCagaagcUGGUGCGCCGCGUCaGCg- -3'
miRNA:   3'- gCGGCGa-----ACCACGUGGCGCGGgCGau -5'
13970 5' -62.8 NC_003521.1 + 116899 0.71 0.400353
Target:  5'- gCGCCGCUgcaacUGGUggagaacaGCGCCGCGCgCCGaCa- -3'
miRNA:   3'- -GCGGCGA-----ACCA--------CGUGGCGCG-GGC-Gau -5'
13970 5' -62.8 NC_003521.1 + 138914 0.71 0.43317
Target:  5'- gGCCGCUcGGUGCGCC-UGCCCu--- -3'
miRNA:   3'- gCGGCGAaCCACGUGGcGCGGGcgau -5'
13970 5' -62.8 NC_003521.1 + 98829 0.7 0.467499
Target:  5'- aGCUGCUUGGcGCggGCCaGCuCCCGCUGc -3'
miRNA:   3'- gCGGCGAACCaCG--UGG-CGcGGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 105331 0.7 0.476299
Target:  5'- uCGCCGCUUucGGUuuuaugugcGCGCCacuGCGUCCGCg- -3'
miRNA:   3'- -GCGGCGAA--CCA---------CGUGG---CGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 14689 0.69 0.512282
Target:  5'- cCGCCGCUggUGGUgggGCAuCCGCGCCaacCUGu -3'
miRNA:   3'- -GCGGCGA--ACCA---CGU-GGCGCGGgc-GAU- -5'
13970 5' -62.8 NC_003521.1 + 98162 0.69 0.494141
Target:  5'- uCGCUGCUgacgGCGCUGCGCcgaCCGCUGa -3'
miRNA:   3'- -GCGGCGAaccaCGUGGCGCG---GGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 163429 0.7 0.476299
Target:  5'- uGCCGCUgccuaccagGGUGcCACCGUcuucgaGCCCGUg- -3'
miRNA:   3'- gCGGCGAa--------CCAC-GUGGCG------CGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 198727 0.74 0.261136
Target:  5'- gCGCgGgCUUGGUGCcagacgaggucuuGCCGUGCUCGCUGg -3'
miRNA:   3'- -GCGgC-GAACCACG-------------UGGCGCGGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 15668 0.69 0.503176
Target:  5'- gCGCCGaggUGGUGCgcgACUGgGUCCGCa- -3'
miRNA:   3'- -GCGGCga-ACCACG---UGGCgCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 187410 0.74 0.279743
Target:  5'- cCGCUGCUcGGUgGCGcCCGaCGCCCGCa- -3'
miRNA:   3'- -GCGGCGAaCCA-CGU-GGC-GCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 176052 0.7 0.476299
Target:  5'- aGgCGCUUGGgaucgcccgGUGCCGCGCCgGCc- -3'
miRNA:   3'- gCgGCGAACCa--------CGUGGCGCGGgCGau -5'
13970 5' -62.8 NC_003521.1 + 13937 0.69 0.512282
Target:  5'- gGCCGCcgUGGUGCccCCGCagcuGCCCucGCUGg -3'
miRNA:   3'- gCGGCGa-ACCACGu-GGCG----CGGG--CGAU- -5'
13970 5' -62.8 NC_003521.1 + 108112 0.69 0.521455
Target:  5'- cCGUCGcCUUGGaccaGUGCCGCGuCCCGCc- -3'
miRNA:   3'- -GCGGC-GAACCa---CGUGGCGC-GGGCGau -5'
13970 5' -62.8 NC_003521.1 + 117657 0.73 0.301346
Target:  5'- gCGCCGCgagacGGUGCGCCGgcccuucuuuuccgaCGCgCCGCUGc -3'
miRNA:   3'- -GCGGCGaa---CCACGUGGC---------------GCG-GGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 233380 0.71 0.400353
Target:  5'- -cCCGCgUGGUGCugugcGCCGCGUCCGUg- -3'
miRNA:   3'- gcGGCGaACCACG-----UGGCGCGGGCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.