miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13970 5' -62.8 NC_003521.1 + 29475 0.66 0.673402
Target:  5'- gGCUGCUgcgGGaccccaacCACuCGCGCCCGCg- -3'
miRNA:   3'- gCGGCGAa--CCac------GUG-GCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 4351 0.66 0.692411
Target:  5'- cCGCCGCcggcGGUucgcucaucgcgGC-CCGCGuCCCGCUc -3'
miRNA:   3'- -GCGGCGaa--CCA------------CGuGGCGC-GGGCGAu -5'
13970 5' -62.8 NC_003521.1 + 103963 0.66 0.701853
Target:  5'- cCGCCGCgaguccGUGCAuuuCUGCGUCUGCa- -3'
miRNA:   3'- -GCGGCGaac---CACGU---GGCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 137842 0.66 0.682925
Target:  5'- aCGCCGC--GGcUGgGCCGC-CCCGCc- -3'
miRNA:   3'- -GCGGCGaaCC-ACgUGGCGcGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 88065 0.66 0.692411
Target:  5'- gGUCGCggUGGUcgGCgGCGCCCGUg- -3'
miRNA:   3'- gCGGCGa-ACCAcgUGgCGCGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 127028 0.66 0.682925
Target:  5'- aCGCCGCcgcGGUGCccgUCGCGCUgGCc- -3'
miRNA:   3'- -GCGGCGaa-CCACGu--GGCGCGGgCGau -5'
13970 5' -62.8 NC_003521.1 + 223800 0.66 0.700911
Target:  5'- gGCCGCcagacgacgGGccUGCGCCGCcgccaccgcgggcGCCUGCUGu -3'
miRNA:   3'- gCGGCGaa-------CC--ACGUGGCG-------------CGGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 152355 0.66 0.692411
Target:  5'- aCGCUGCUcUGGggccggccgggGCGgCGCGCCCuCUAc -3'
miRNA:   3'- -GCGGCGA-ACCa----------CGUgGCGCGGGcGAU- -5'
13970 5' -62.8 NC_003521.1 + 43561 0.66 0.711244
Target:  5'- cCGCCGCcg---GCGCCGCGUcaagcaCCGCUc -3'
miRNA:   3'- -GCGGCGaaccaCGUGGCGCG------GGCGAu -5'
13970 5' -62.8 NC_003521.1 + 125429 0.66 0.720575
Target:  5'- gGCCGUggcGGccGC-CCGCGCCCuGCa- -3'
miRNA:   3'- gCGGCGaa-CCa-CGuGGCGCGGG-CGau -5'
13970 5' -62.8 NC_003521.1 + 104968 0.66 0.701853
Target:  5'- uGCCGCggGG-GCGCCGCGagaCGUc- -3'
miRNA:   3'- gCGGCGaaCCaCGUGGCGCgg-GCGau -5'
13970 5' -62.8 NC_003521.1 + 182263 0.66 0.682925
Target:  5'- aGCCGUgaUUGGcuugagGUACUGCguGCCCGCg- -3'
miRNA:   3'- gCGGCG--AACCa-----CGUGGCG--CGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 68353 0.66 0.682925
Target:  5'- cCGCCGac-GGcGCACCGCuGCCgGCc- -3'
miRNA:   3'- -GCGGCgaaCCaCGUGGCG-CGGgCGau -5'
13970 5' -62.8 NC_003521.1 + 120913 0.66 0.673402
Target:  5'- gGCUGCUUGcGUuuGCgGCuGCCCGCg- -3'
miRNA:   3'- gCGGCGAAC-CAcgUGgCG-CGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 44149 0.66 0.673402
Target:  5'- aGCCGCgacauccUGGUGgACCuGCGCaCCcaGCUGg -3'
miRNA:   3'- gCGGCGa------ACCACgUGG-CGCG-GG--CGAU- -5'
13970 5' -62.8 NC_003521.1 + 180929 0.66 0.682925
Target:  5'- gGCCGCUcgaUGGUgGCGCgGUGCcguaguCCGCg- -3'
miRNA:   3'- gCGGCGA---ACCA-CGUGgCGCG------GGCGau -5'
13970 5' -62.8 NC_003521.1 + 113695 0.66 0.711244
Target:  5'- gCGCCGCcuggaGGUGCACgaCGCG-CUGCUc -3'
miRNA:   3'- -GCGGCGaa---CCACGUG--GCGCgGGCGAu -5'
13970 5' -62.8 NC_003521.1 + 129300 0.66 0.690517
Target:  5'- gGUCGUggaacuugaugGcGUGCGCCGCcgccgccaGCCCGCUGg -3'
miRNA:   3'- gCGGCGaa---------C-CACGUGGCG--------CGGGCGAU- -5'
13970 5' -62.8 NC_003521.1 + 72010 0.66 0.701853
Target:  5'- gGCCcaGCUUcaGGaUGCGCCGCgugGCCUGCa- -3'
miRNA:   3'- gCGG--CGAA--CC-ACGUGGCG---CGGGCGau -5'
13970 5' -62.8 NC_003521.1 + 124455 0.66 0.700911
Target:  5'- gGCCGCggcGGcacGCguucgccGCCGCGCUCGCg- -3'
miRNA:   3'- gCGGCGaa-CCa--CG-------UGGCGCGGGCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.