miRNA display CGI


Results 41 - 60 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13971 3' -51.8 NC_003521.1 + 53200 0.66 0.996382
Target:  5'- gCGGCGcGCGgcCCGgcucgcccuGGCAgGCCGUGc -3'
miRNA:   3'- -GCCGUuUGCaaGGU---------UCGUgCGGUACc -5'
13971 3' -51.8 NC_003521.1 + 53959 0.71 0.935367
Target:  5'- gGGCcGACGagCCGugcuGCACGCCGccgcUGGg -3'
miRNA:   3'- gCCGuUUGCaaGGUu---CGUGCGGU----ACC- -5'
13971 3' -51.8 NC_003521.1 + 55642 0.66 0.997775
Target:  5'- gGGCGucACGcUCCAcaGGUGCGCCAc-- -3'
miRNA:   3'- gCCGUu-UGCaAGGU--UCGUGCGGUacc -5'
13971 3' -51.8 NC_003521.1 + 56032 0.7 0.956942
Target:  5'- gCGGCcaccaGGGCG-UCCAGGCGCGCguUGc -3'
miRNA:   3'- -GCCG-----UUUGCaAGGUUCGUGCGguACc -5'
13971 3' -51.8 NC_003521.1 + 57236 0.69 0.982298
Target:  5'- aGGCGAGCGgcUCucGCGCgGCCAguUGGc -3'
miRNA:   3'- gCCGUUUGCaaGGuuCGUG-CGGU--ACC- -5'
13971 3' -51.8 NC_003521.1 + 57312 0.67 0.993297
Target:  5'- aCGGCAaaauaGACGcucggacaccugUCCGAGCGCGgUAUGa -3'
miRNA:   3'- -GCCGU-----UUGCa-----------AGGUUCGUGCgGUACc -5'
13971 3' -51.8 NC_003521.1 + 57595 0.76 0.774764
Target:  5'- gCGGCGAaccccgagucaGCGUgccgucgcgcUCCAGGCACGUCAcGGg -3'
miRNA:   3'- -GCCGUU-----------UGCA----------AGGUUCGUGCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 59264 0.7 0.970196
Target:  5'- -uGCGGGCGUUCgUAAGCGCGCUAc-- -3'
miRNA:   3'- gcCGUUUGCAAG-GUUCGUGCGGUacc -5'
13971 3' -51.8 NC_003521.1 + 59564 0.66 0.998125
Target:  5'- cCGGCGccGCGgggguuucgUCCGagaAGCGCGCCAa-- -3'
miRNA:   3'- -GCCGUu-UGCa--------AGGU---UCGUGCGGUacc -5'
13971 3' -51.8 NC_003521.1 + 59655 0.73 0.881815
Target:  5'- gCGGCAGACGcu---GGCGCGCC-UGGa -3'
miRNA:   3'- -GCCGUUUGCaagguUCGUGCGGuACC- -5'
13971 3' -51.8 NC_003521.1 + 64334 0.66 0.996382
Target:  5'- aCGaGCAGAUGagCCAGcuGCAgGCCcUGGg -3'
miRNA:   3'- -GC-CGUUUGCaaGGUU--CGUgCGGuACC- -5'
13971 3' -51.8 NC_003521.1 + 65144 0.72 0.919617
Target:  5'- gGcGCAAGCGgaCCucGCACggGCCGUGGa -3'
miRNA:   3'- gC-CGUUUGCaaGGuuCGUG--CGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 65376 0.7 0.960223
Target:  5'- aCGGCGcgccgccGAuCGUacgCCGAGCACGCCAc-- -3'
miRNA:   3'- -GCCGU-------UU-GCAa--GGUUCGUGCGGUacc -5'
13971 3' -51.8 NC_003521.1 + 65499 0.66 0.995782
Target:  5'- aGGCAGGCGaccUUCauCGAGCGCuGUCAgcUGGg -3'
miRNA:   3'- gCCGUUUGC---AAG--GUUCGUG-CGGU--ACC- -5'
13971 3' -51.8 NC_003521.1 + 70051 0.69 0.978006
Target:  5'- gGGCGccaaGACGUUCgAGGUGCauuCCAUGGc -3'
miRNA:   3'- gCCGU----UUGCAAGgUUCGUGc--GGUACC- -5'
13971 3' -51.8 NC_003521.1 + 70736 0.7 0.963994
Target:  5'- cCGGCAcuuCG-UCCAgcugcAGCGCGCCGcGGc -3'
miRNA:   3'- -GCCGUuu-GCaAGGU-----UCGUGCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 71030 0.71 0.944689
Target:  5'- cCGGCGGAgGauagUCCcucGAGCgcccaaagcgcgGCGCCAUGGg -3'
miRNA:   3'- -GCCGUUUgCa---AGG---UUCG------------UGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 71530 0.69 0.982298
Target:  5'- cCGGCcGACGUcaCCGAGCcCGCCGc-- -3'
miRNA:   3'- -GCCGuUUGCAa-GGUUCGuGCGGUacc -5'
13971 3' -51.8 NC_003521.1 + 72582 0.73 0.874726
Target:  5'- gCGGCAAcGCGUUCCAggcgcucaagAGCGCGCUg--- -3'
miRNA:   3'- -GCCGUU-UGCAAGGU----------UCGUGCGGuacc -5'
13971 3' -51.8 NC_003521.1 + 74084 0.66 0.996031
Target:  5'- uGGCGGGCGaggucUUCCccgccaaggaugauAGCugGCUGUGGc -3'
miRNA:   3'- gCCGUUUGC-----AAGGu-------------UCGugCGGUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.