miRNA display CGI


Results 21 - 40 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13971 3' -51.8 NC_003521.1 + 27457 0.71 0.949002
Target:  5'- uCGGCcguGAGCG--CCAGGCugGCCA-GGu -3'
miRNA:   3'- -GCCG---UUUGCaaGGUUCGugCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 28006 0.68 0.985927
Target:  5'- gCGGCAccuCGcugUCCuccuccAGCACGCCGcGGg -3'
miRNA:   3'- -GCCGUuu-GCa--AGGu-----UCGUGCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 29154 0.66 0.996909
Target:  5'- -uGCAGAcCGUgUCCGAGCugGCCu--- -3'
miRNA:   3'- gcCGUUU-GCA-AGGUUCGugCGGuacc -5'
13971 3' -51.8 NC_003521.1 + 30912 0.7 0.960577
Target:  5'- gCGGCAGGCGagagcggUCCuggGGCAguCGCCGUGc -3'
miRNA:   3'- -GCCGUUUGCa------AGGu--UCGU--GCGGUACc -5'
13971 3' -51.8 NC_003521.1 + 33118 0.71 0.944689
Target:  5'- aCGGCGuAGCGggCCuucuccAGCACGCCgAUGa -3'
miRNA:   3'- -GCCGU-UUGCaaGGu-----UCGUGCGG-UACc -5'
13971 3' -51.8 NC_003521.1 + 35026 0.72 0.913895
Target:  5'- cCGGCGGACGcggUUggGCACGCuCAUGc -3'
miRNA:   3'- -GCCGUUUGCaa-GGuuCGUGCG-GUACc -5'
13971 3' -51.8 NC_003521.1 + 36785 0.75 0.809931
Target:  5'- uGGCGGGCGUggaggacgcgccuUUCGGGCAgGCCGUGa -3'
miRNA:   3'- gCCGUUUGCA-------------AGGUUCGUgCGGUACc -5'
13971 3' -51.8 NC_003521.1 + 37322 0.68 0.985927
Target:  5'- gCGGCAGACGguagagaUCGAcGUACGCUAUGu -3'
miRNA:   3'- -GCCGUUUGCaa-----GGUU-CGUGCGGUACc -5'
13971 3' -51.8 NC_003521.1 + 37428 0.67 0.993481
Target:  5'- uGGC--GCGgcgCCGAGCcucugaaggugACGCUGUGGg -3'
miRNA:   3'- gCCGuuUGCaa-GGUUCG-----------UGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 37849 0.68 0.988957
Target:  5'- cCGGaGGGCGUUacaCAGGCugGCCugcGGa -3'
miRNA:   3'- -GCCgUUUGCAAg--GUUCGugCGGua-CC- -5'
13971 3' -51.8 NC_003521.1 + 38299 0.66 0.996909
Target:  5'- aCGGCAGuUGUUgCAggccgaGGCACGgCCAaGGg -3'
miRNA:   3'- -GCCGUUuGCAAgGU------UCGUGC-GGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 39417 0.67 0.992522
Target:  5'- uGGCAcaGGCcgUCCAgucccguaGGCgGCGCCGUGGc -3'
miRNA:   3'- gCCGU--UUGcaAGGU--------UCG-UGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 40257 0.67 0.995104
Target:  5'- cCGGCAGcucACGcuugguuggCCGuuuGCACGCC-UGGg -3'
miRNA:   3'- -GCCGUU---UGCaa-------GGUu--CGUGCGGuACC- -5'
13971 3' -51.8 NC_003521.1 + 40473 0.71 0.949002
Target:  5'- aCGGaUAGAUGUgUCCGcGGCGCGCCAcGGc -3'
miRNA:   3'- -GCC-GUUUGCA-AGGU-UCGUGCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 40674 0.67 0.994339
Target:  5'- gGGCAAACGaUgUggGCGgcgUGCUGUGGa -3'
miRNA:   3'- gCCGUUUGCaAgGuuCGU---GCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 42612 0.69 0.978006
Target:  5'- aCGGCcgccGGCGgcgCCGucGC-CGCCAUGGa -3'
miRNA:   3'- -GCCGu---UUGCaa-GGUu-CGuGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 43125 0.72 0.919617
Target:  5'- gCGGCGAGCGcUCgGcGCugGgCGUGGa -3'
miRNA:   3'- -GCCGUUUGCaAGgUuCGugCgGUACC- -5'
13971 3' -51.8 NC_003521.1 + 45245 0.68 0.985927
Target:  5'- cCGGCAGACGggccugacccCCAAGCGCuuCC-UGGa -3'
miRNA:   3'- -GCCGUUUGCaa--------GGUUCGUGc-GGuACC- -5'
13971 3' -51.8 NC_003521.1 + 46521 0.7 0.960577
Target:  5'- uGGCAcacgGGCGUcuucUCCAGGCGCaCCA-GGg -3'
miRNA:   3'- gCCGU----UUGCA----AGGUUCGUGcGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 47308 0.73 0.881116
Target:  5'- cCGaGCGAACGUccucuuUCCAGGUgucuccaACGUCGUGGg -3'
miRNA:   3'- -GC-CGUUUGCA------AGGUUCG-------UGCGGUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.