miRNA display CGI


Results 21 - 40 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13971 3' -51.8 NC_003521.1 + 95895 0.73 0.89336
Target:  5'- gCGGCGAcgcGCGacaugaacuccucggCCAccGGCAUGCCGUGGg -3'
miRNA:   3'- -GCCGUU---UGCaa-------------GGU--UCGUGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 88063 0.73 0.89533
Target:  5'- aGGCGAcgcCGUUCCGcGCGCuGCcCGUGGa -3'
miRNA:   3'- gCCGUUu--GCAAGGUuCGUG-CG-GUACC- -5'
13971 3' -51.8 NC_003521.1 + 181145 0.73 0.89533
Target:  5'- gGGCuccaccuGGCGUcugagcuccUCCAGGCGCGCCAg-- -3'
miRNA:   3'- gCCGu------UUGCA---------AGGUUCGUGCGGUacc -5'
13971 3' -51.8 NC_003521.1 + 216851 0.72 0.907939
Target:  5'- gCGGCGGACGacugUUCCAGGC---CCGUGGa -3'
miRNA:   3'- -GCCGUUUGC----AAGGUUCGugcGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 99765 0.72 0.91331
Target:  5'- -cGCAGACGUUgugguggUCGAGCAgGCCcgGGg -3'
miRNA:   3'- gcCGUUUGCAA-------GGUUCGUgCGGuaCC- -5'
13971 3' -51.8 NC_003521.1 + 35026 0.72 0.913895
Target:  5'- cCGGCGGACGcggUUggGCACGCuCAUGc -3'
miRNA:   3'- -GCCGUUUGCaa-GGuuCGUGCG-GUACc -5'
13971 3' -51.8 NC_003521.1 + 169461 0.72 0.919617
Target:  5'- gCGGCGGguuCGUcgCCAGGCGCGUCGucguUGGc -3'
miRNA:   3'- -GCCGUUu--GCAa-GGUUCGUGCGGU----ACC- -5'
13971 3' -51.8 NC_003521.1 + 43125 0.72 0.919617
Target:  5'- gCGGCGAGCGcUCgGcGCugGgCGUGGa -3'
miRNA:   3'- -GCCGUUUGCaAGgUuCGugCgGUACC- -5'
13971 3' -51.8 NC_003521.1 + 65144 0.72 0.919617
Target:  5'- gGcGCAAGCGgaCCucGCACggGCCGUGGa -3'
miRNA:   3'- gC-CGUUUGCaaGGuuCGUG--CGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 163205 0.72 0.924565
Target:  5'- uCGGCcGGCGccgUCaCGGGCGCGCCcggugacGUGGg -3'
miRNA:   3'- -GCCGuUUGCa--AG-GUUCGUGCGG-------UACC- -5'
13971 3' -51.8 NC_003521.1 + 104976 0.72 0.925103
Target:  5'- gGGCuGACGUUCCcGGUGC-UCAUGGg -3'
miRNA:   3'- gCCGuUUGCAAGGuUCGUGcGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 188452 0.72 0.925103
Target:  5'- aCGGCGgucaggauGACGcgCCuccgagcuacGAGCAgGCCGUGGg -3'
miRNA:   3'- -GCCGU--------UUGCaaGG----------UUCGUgCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 221697 0.72 0.925103
Target:  5'- gGGUcu-CGUUgCCGAGCACGCaGUGGu -3'
miRNA:   3'- gCCGuuuGCAA-GGUUCGUGCGgUACC- -5'
13971 3' -51.8 NC_003521.1 + 168099 0.72 0.930353
Target:  5'- uCGGCGAagaccgaggagGCGUggaucgCCGAGgacgacaGCGCCGUGGg -3'
miRNA:   3'- -GCCGUU-----------UGCAa-----GGUUCg------UGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 53959 0.71 0.935367
Target:  5'- gGGCcGACGagCCGugcuGCACGCCGccgcUGGg -3'
miRNA:   3'- gCCGuUUGCaaGGUu---CGUGCGGU----ACC- -5'
13971 3' -51.8 NC_003521.1 + 155265 0.71 0.939678
Target:  5'- gCGGCGgcGGCGccUCAGGCccgucgcugggcaACGCCAUGGg -3'
miRNA:   3'- -GCCGU--UUGCaaGGUUCG-------------UGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 232162 0.71 0.939678
Target:  5'- aCGGCGGAUGgaguuaUCuCGAGaaaaccguccuccCACGCCAUGGg -3'
miRNA:   3'- -GCCGUUUGCa-----AG-GUUC-------------GUGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 71030 0.71 0.944689
Target:  5'- cCGGCGGAgGauagUCCcucGAGCgcccaaagcgcgGCGCCAUGGg -3'
miRNA:   3'- -GCCGUUUgCa---AGG---UUCG------------UGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 130677 0.71 0.944689
Target:  5'- uGGC-GGCcUUCCAcgGGUACGCCGUGa -3'
miRNA:   3'- gCCGuUUGcAAGGU--UCGUGCGGUACc -5'
13971 3' -51.8 NC_003521.1 + 33118 0.71 0.944689
Target:  5'- aCGGCGuAGCGggCCuucuccAGCACGCCgAUGa -3'
miRNA:   3'- -GCCGU-UUGCaaGGu-----UCGUGCGG-UACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.