miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13971 3' -51.8 NC_003521.1 + 208490 1.11 0.00915
Target:  5'- cCGGCAAACGUUCCAAGCACGCCAUGGu -3'
miRNA:   3'- -GCCGUUUGCAAGGUUCGUGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 120068 0.83 0.423502
Target:  5'- uGGCAGGcCGgcaUCCAGGCGCGCCAccUGGu -3'
miRNA:   3'- gCCGUUU-GCa--AGGUUCGUGCGGU--ACC- -5'
13971 3' -51.8 NC_003521.1 + 101913 0.81 0.506603
Target:  5'- gGGCAGGCGcaCCGAGCG-GCCGUGGu -3'
miRNA:   3'- gCCGUUUGCaaGGUUCGUgCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 14704 0.78 0.667005
Target:  5'- gGGCAucCGcgCCAAccuguGCACGCCGUGGu -3'
miRNA:   3'- gCCGUuuGCaaGGUU-----CGUGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 202488 0.77 0.707197
Target:  5'- cCGGCGAACGUUCCuaaaACGCCAUc- -3'
miRNA:   3'- -GCCGUUUGCAAGGuucgUGCGGUAcc -5'
13971 3' -51.8 NC_003521.1 + 224442 0.76 0.765417
Target:  5'- gGGCGAGCGgUCCAGGUGCGUCuUGa -3'
miRNA:   3'- gCCGUUUGCaAGGUUCGUGCGGuACc -5'
13971 3' -51.8 NC_003521.1 + 57595 0.76 0.774764
Target:  5'- gCGGCGAaccccgagucaGCGUgccgucgcgcUCCAGGCACGUCAcGGg -3'
miRNA:   3'- -GCCGUU-----------UGCA----------AGGUUCGUGCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 114712 0.75 0.793971
Target:  5'- cCGGCAcGACGagaucgaccgcuggaUCC-GGCACGCCGUGGg -3'
miRNA:   3'- -GCCGU-UUGCa--------------AGGuUCGUGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 36785 0.75 0.809931
Target:  5'- uGGCGGGCGUggaggacgcgccuUUCGGGCAgGCCGUGa -3'
miRNA:   3'- gCCGUUUGCA-------------AGGUUCGUgCGGUACc -5'
13971 3' -51.8 NC_003521.1 + 200502 0.75 0.810802
Target:  5'- uGGCGGcGCGcaCCGAGCugGCCAaGGg -3'
miRNA:   3'- gCCGUU-UGCaaGGUUCGugCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 166252 0.75 0.810802
Target:  5'- cCGGCGAGCGggCCGugcucacgGGCACGCgCAcGGc -3'
miRNA:   3'- -GCCGUUUGCaaGGU--------UCGUGCG-GUaCC- -5'
13971 3' -51.8 NC_003521.1 + 113545 0.74 0.836181
Target:  5'- aCGGCGugucgGACGUgCCGcGCcuggGCGCCAUGGa -3'
miRNA:   3'- -GCCGU-----UUGCAaGGUuCG----UGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 127283 0.74 0.852196
Target:  5'- gCGGC--ACG-UCCGA-CACGCCGUGGu -3'
miRNA:   3'- -GCCGuuUGCaAGGUUcGUGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 165372 0.74 0.852196
Target:  5'- uGGUAGuGCGUgUCCAGGUACGCguUGGc -3'
miRNA:   3'- gCCGUU-UGCA-AGGUUCGUGCGguACC- -5'
13971 3' -51.8 NC_003521.1 + 72582 0.73 0.874726
Target:  5'- gCGGCAAcGCGUUCCAggcgcucaagAGCGCGCUg--- -3'
miRNA:   3'- -GCCGUU-UGCAAGGU----------UCGUGCGGuacc -5'
13971 3' -51.8 NC_003521.1 + 11252 0.73 0.874726
Target:  5'- aCGGCGAACGU--CGAGCcCGCguUGGg -3'
miRNA:   3'- -GCCGUUUGCAagGUUCGuGCGguACC- -5'
13971 3' -51.8 NC_003521.1 + 47308 0.73 0.881116
Target:  5'- cCGaGCGAACGUccucuuUCCAGGUgucuccaACGUCGUGGg -3'
miRNA:   3'- -GC-CGUUUGCA------AGGUUCG-------UGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 59655 0.73 0.881815
Target:  5'- gCGGCAGACGcu---GGCGCGCC-UGGa -3'
miRNA:   3'- -GCCGUUUGCaagguUCGUGCGGuACC- -5'
13971 3' -51.8 NC_003521.1 + 101997 0.73 0.888685
Target:  5'- aGGCcguAGCcgccgCCAucaGGCGCGCCAUGGa -3'
miRNA:   3'- gCCGu--UUGcaa--GGU---UCGUGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 115696 0.73 0.888685
Target:  5'- gGGCAAACuggCCAAGCugacgGCGgCCGUGGu -3'
miRNA:   3'- gCCGUUUGcaaGGUUCG-----UGC-GGUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.