miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13971 3' -51.8 NC_003521.1 + 218443 0.66 0.996909
Target:  5'- gCGGCAccACGgaggacauggCCGGcacCACGCCGUGGg -3'
miRNA:   3'- -GCCGUu-UGCaa--------GGUUc--GUGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 55642 0.66 0.997775
Target:  5'- gGGCGucACGcUCCAcaGGUGCGCCAc-- -3'
miRNA:   3'- gCCGUu-UGCaAGGU--UCGUGCGGUacc -5'
13971 3' -51.8 NC_003521.1 + 118191 0.66 0.996382
Target:  5'- cCGGCAAAguCGgggccgCCGAGCGCGCgGc-- -3'
miRNA:   3'- -GCCGUUU--GCaa----GGUUCGUGCGgUacc -5'
13971 3' -51.8 NC_003521.1 + 53200 0.66 0.996382
Target:  5'- gCGGCGcGCGgcCCGgcucgcccuGGCAgGCCGUGc -3'
miRNA:   3'- -GCCGUuUGCaaGGU---------UCGUgCGGUACc -5'
13971 3' -51.8 NC_003521.1 + 145871 0.66 0.99686
Target:  5'- gCGGCGGGCGgcgCCGacgacgaGGC-CGCCGgcggcgGGa -3'
miRNA:   3'- -GCCGUUUGCaa-GGU-------UCGuGCGGUa-----CC- -5'
13971 3' -51.8 NC_003521.1 + 87927 0.66 0.996382
Target:  5'- uGGCcgcCGcgCCGGGCAUGCucuuCAUGGa -3'
miRNA:   3'- gCCGuuuGCaaGGUUCGUGCG----GUACC- -5'
13971 3' -51.8 NC_003521.1 + 222107 0.66 0.996909
Target:  5'- cCGGC-AGCGUcUCgAGGCgcuGCGCCG-GGa -3'
miRNA:   3'- -GCCGuUUGCA-AGgUUCG---UGCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 150928 0.66 0.996909
Target:  5'- aCGGCGugUGggCCGAGCGCGgUCAg-- -3'
miRNA:   3'- -GCCGUuuGCaaGGUUCGUGC-GGUacc -5'
13971 3' -51.8 NC_003521.1 + 64334 0.66 0.996382
Target:  5'- aCGaGCAGAUGagCCAGcuGCAgGCCcUGGg -3'
miRNA:   3'- -GC-CGUUUGCaaGGUU--CGUgCGGuACC- -5'
13971 3' -51.8 NC_003521.1 + 38299 0.66 0.996909
Target:  5'- aCGGCAGuUGUUgCAggccgaGGCACGgCCAaGGg -3'
miRNA:   3'- -GCCGUUuGCAAgGU------UCGUGC-GGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 131049 0.66 0.995782
Target:  5'- gCGGCGgcGGCGggCCucuGgACGCgGUGGc -3'
miRNA:   3'- -GCCGU--UUGCaaGGuu-CgUGCGgUACC- -5'
13971 3' -51.8 NC_003521.1 + 124841 0.66 0.996909
Target:  5'- -aGCAGAUuUUC---GCGCGCCAUGGg -3'
miRNA:   3'- gcCGUUUGcAAGguuCGUGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 235135 0.66 0.998125
Target:  5'- aCGGCGccCGUUCCccgcggacGGGCGC-CCGUGu -3'
miRNA:   3'- -GCCGUuuGCAAGG--------UUCGUGcGGUACc -5'
13971 3' -51.8 NC_003521.1 + 146552 0.66 0.995718
Target:  5'- gCGGCGgcAGCGUUCUcagucaaaaaaaaAAGCACGCUu--- -3'
miRNA:   3'- -GCCGU--UUGCAAGG-------------UUCGUGCGGuacc -5'
13971 3' -51.8 NC_003521.1 + 206957 0.66 0.997372
Target:  5'- aCGGCGAugagcccgugGCGUUCCAcgaAGCgaaugACGCCccaGGc -3'
miRNA:   3'- -GCCGUU----------UGCAAGGU---UCG-----UGCGGua-CC- -5'
13971 3' -51.8 NC_003521.1 + 196253 0.66 0.995782
Target:  5'- gCGGUuucuGugGUUCCGGGUAC-CCGcGGu -3'
miRNA:   3'- -GCCGu---UugCAAGGUUCGUGcGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 25551 0.66 0.996382
Target:  5'- aCGGCGGACGcuguugUgCAGGCG-GCCGcGGg -3'
miRNA:   3'- -GCCGUUUGCa-----AgGUUCGUgCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 76991 0.66 0.996909
Target:  5'- gCGGCGAugGg--CAGGCACGgCAUc- -3'
miRNA:   3'- -GCCGUUugCaagGUUCGUGCgGUAcc -5'
13971 3' -51.8 NC_003521.1 + 65499 0.66 0.995782
Target:  5'- aGGCAGGCGaccUUCauCGAGCGCuGUCAgcUGGg -3'
miRNA:   3'- gCCGUUUGC---AAG--GUUCGUG-CGGU--ACC- -5'
13971 3' -51.8 NC_003521.1 + 29154 0.66 0.996909
Target:  5'- -uGCAGAcCGUgUCCGAGCugGCCu--- -3'
miRNA:   3'- gcCGUUU-GCA-AGGUUCGugCGGuacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.