miRNA display CGI


Results 1 - 20 of 226 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13971 3' -51.8 NC_003521.1 + 56032 0.7 0.956942
Target:  5'- gCGGCcaccaGGGCG-UCCAGGCGCGCguUGc -3'
miRNA:   3'- -GCCG-----UUUGCaAGGUUCGUGCGguACc -5'
13971 3' -51.8 NC_003521.1 + 65144 0.72 0.919617
Target:  5'- gGcGCAAGCGgaCCucGCACggGCCGUGGa -3'
miRNA:   3'- gC-CGUUUGCaaGGuuCGUG--CGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 43125 0.72 0.919617
Target:  5'- gCGGCGAGCGcUCgGcGCugGgCGUGGa -3'
miRNA:   3'- -GCCGUUUGCaAGgUuCGugCgGUACC- -5'
13971 3' -51.8 NC_003521.1 + 232162 0.71 0.939678
Target:  5'- aCGGCGGAUGgaguuaUCuCGAGaaaaccguccuccCACGCCAUGGg -3'
miRNA:   3'- -GCCGUUUGCa-----AG-GUUC-------------GUGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 33118 0.71 0.944689
Target:  5'- aCGGCGuAGCGggCCuucuccAGCACGCCgAUGa -3'
miRNA:   3'- -GCCGU-UUGCaaGGu-----UCGUGCGG-UACc -5'
13971 3' -51.8 NC_003521.1 + 71030 0.71 0.944689
Target:  5'- cCGGCGGAgGauagUCCcucGAGCgcccaaagcgcgGCGCCAUGGg -3'
miRNA:   3'- -GCCGUUUgCa---AGG---UUCG------------UGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 27457 0.71 0.949002
Target:  5'- uCGGCcguGAGCG--CCAGGCugGCCA-GGu -3'
miRNA:   3'- -GCCG---UUUGCaaGGUUCGugCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 223188 0.71 0.949002
Target:  5'- uGGCGuACGUagcUCCGcAGCGCGUCggGGu -3'
miRNA:   3'- gCCGUuUGCA---AGGU-UCGUGCGGuaCC- -5'
13971 3' -51.8 NC_003521.1 + 40473 0.71 0.949002
Target:  5'- aCGGaUAGAUGUgUCCGcGGCGCGCCAcGGc -3'
miRNA:   3'- -GCC-GUUUGCA-AGGU-UCGUGCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 35026 0.72 0.913895
Target:  5'- cCGGCGGACGcggUUggGCACGCuCAUGc -3'
miRNA:   3'- -GCCGUUUGCaa-GGuuCGUGCG-GUACc -5'
13971 3' -51.8 NC_003521.1 + 216851 0.72 0.907939
Target:  5'- gCGGCGGACGacugUUCCAGGC---CCGUGGa -3'
miRNA:   3'- -GCCGUUUGC----AAGGUUCGugcGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 59655 0.73 0.881815
Target:  5'- gCGGCAGACGcu---GGCGCGCC-UGGa -3'
miRNA:   3'- -GCCGUUUGCaagguUCGUGCGGuACC- -5'
13971 3' -51.8 NC_003521.1 + 224442 0.76 0.765417
Target:  5'- gGGCGAGCGgUCCAGGUGCGUCuUGa -3'
miRNA:   3'- gCCGUUUGCaAGGUUCGUGCGGuACc -5'
13971 3' -51.8 NC_003521.1 + 57595 0.76 0.774764
Target:  5'- gCGGCGAaccccgagucaGCGUgccgucgcgcUCCAGGCACGUCAcGGg -3'
miRNA:   3'- -GCCGUU-----------UGCA----------AGGUUCGUGCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 36785 0.75 0.809931
Target:  5'- uGGCGGGCGUggaggacgcgccuUUCGGGCAgGCCGUGa -3'
miRNA:   3'- gCCGUUUGCA-------------AGGUUCGUgCGGUACc -5'
13971 3' -51.8 NC_003521.1 + 166252 0.75 0.810802
Target:  5'- cCGGCGAGCGggCCGugcucacgGGCACGCgCAcGGc -3'
miRNA:   3'- -GCCGUUUGCaaGGU--------UCGUGCG-GUaCC- -5'
13971 3' -51.8 NC_003521.1 + 165372 0.74 0.852196
Target:  5'- uGGUAGuGCGUgUCCAGGUACGCguUGGc -3'
miRNA:   3'- gCCGUU-UGCA-AGGUUCGUGCGguACC- -5'
13971 3' -51.8 NC_003521.1 + 127283 0.74 0.852196
Target:  5'- gCGGC--ACG-UCCGA-CACGCCGUGGu -3'
miRNA:   3'- -GCCGuuUGCaAGGUUcGUGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 11252 0.73 0.874726
Target:  5'- aCGGCGAACGU--CGAGCcCGCguUGGg -3'
miRNA:   3'- -GCCGUUUGCAagGUUCGuGCGguACC- -5'
13971 3' -51.8 NC_003521.1 + 47308 0.73 0.881116
Target:  5'- cCGaGCGAACGUccucuuUCCAGGUgucuccaACGUCGUGGg -3'
miRNA:   3'- -GC-CGUUUGCA------AGGUUCG-------UGCGGUACC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.