miRNA display CGI


Results 1 - 20 of 226 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13971 3' -51.8 NC_003521.1 + 208490 1.11 0.00915
Target:  5'- cCGGCAAACGUUCCAAGCACGCCAUGGu -3'
miRNA:   3'- -GCCGUUUGCAAGGUUCGUGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 104976 0.72 0.925103
Target:  5'- gGGCuGACGUUCCcGGUGC-UCAUGGg -3'
miRNA:   3'- gCCGuUUGCAAGGuUCGUGcGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 168099 0.72 0.930353
Target:  5'- uCGGCGAagaccgaggagGCGUggaucgCCGAGgacgacaGCGCCGUGGg -3'
miRNA:   3'- -GCCGUU-----------UGCAa-----GGUUCg------UGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 235135 0.66 0.998125
Target:  5'- aCGGCGccCGUUCCccgcggacGGGCGC-CCGUGu -3'
miRNA:   3'- -GCCGUuuGCAAGG--------UUCGUGcGGUACc -5'
13971 3' -51.8 NC_003521.1 + 114712 0.75 0.793971
Target:  5'- cCGGCAcGACGagaucgaccgcuggaUCC-GGCACGCCGUGGg -3'
miRNA:   3'- -GCCGU-UUGCa--------------AGGuUCGUGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 200502 0.75 0.810802
Target:  5'- uGGCGGcGCGcaCCGAGCugGCCAaGGg -3'
miRNA:   3'- gCCGUU-UGCaaGGUUCGugCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 72582 0.73 0.874726
Target:  5'- gCGGCAAcGCGUUCCAggcgcucaagAGCGCGCUg--- -3'
miRNA:   3'- -GCCGUU-UGCAAGGU----------UCGUGCGGuacc -5'
13971 3' -51.8 NC_003521.1 + 101997 0.73 0.888685
Target:  5'- aGGCcguAGCcgccgCCAucaGGCGCGCCAUGGa -3'
miRNA:   3'- gCCGu--UUGcaa--GGU---UCGUGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 88063 0.73 0.89533
Target:  5'- aGGCGAcgcCGUUCCGcGCGCuGCcCGUGGa -3'
miRNA:   3'- gCCGUUu--GCAAGGUuCGUG-CG-GUACC- -5'
13971 3' -51.8 NC_003521.1 + 188452 0.72 0.925103
Target:  5'- aCGGCGgucaggauGACGcgCCuccgagcuacGAGCAgGCCGUGGg -3'
miRNA:   3'- -GCCGU--------UUGCaaGG----------UUCGUgCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 99765 0.72 0.91331
Target:  5'- -cGCAGACGUUgugguggUCGAGCAgGCCcgGGg -3'
miRNA:   3'- gcCGUUUGCAA-------GGUUCGUgCGGuaCC- -5'
13971 3' -51.8 NC_003521.1 + 95895 0.73 0.89336
Target:  5'- gCGGCGAcgcGCGacaugaacuccucggCCAccGGCAUGCCGUGGg -3'
miRNA:   3'- -GCCGUU---UGCaa-------------GGU--UCGUGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 120068 0.83 0.423502
Target:  5'- uGGCAGGcCGgcaUCCAGGCGCGCCAccUGGu -3'
miRNA:   3'- gCCGUUU-GCa--AGGUUCGUGCGGU--ACC- -5'
13971 3' -51.8 NC_003521.1 + 169461 0.72 0.919617
Target:  5'- gCGGCGGguuCGUcgCCAGGCGCGUCGucguUGGc -3'
miRNA:   3'- -GCCGUUu--GCAa-GGUUCGUGCGGU----ACC- -5'
13971 3' -51.8 NC_003521.1 + 14704 0.78 0.667005
Target:  5'- gGGCAucCGcgCCAAccuguGCACGCCGUGGu -3'
miRNA:   3'- gCCGUuuGCaaGGUU-----CGUGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 115696 0.73 0.888685
Target:  5'- gGGCAAACuggCCAAGCugacgGCGgCCGUGGu -3'
miRNA:   3'- gCCGUUUGcaaGGUUCG-----UGC-GGUACC- -5'
13971 3' -51.8 NC_003521.1 + 163205 0.72 0.924565
Target:  5'- uCGGCcGGCGccgUCaCGGGCGCGCCcggugacGUGGg -3'
miRNA:   3'- -GCCGuUUGCa--AG-GUUCGUGCGG-------UACC- -5'
13971 3' -51.8 NC_003521.1 + 221697 0.72 0.925103
Target:  5'- gGGUcu-CGUUgCCGAGCACGCaGUGGu -3'
miRNA:   3'- gCCGuuuGCAA-GGUUCGUGCGgUACC- -5'
13971 3' -51.8 NC_003521.1 + 202488 0.77 0.707197
Target:  5'- cCGGCGAACGUUCCuaaaACGCCAUc- -3'
miRNA:   3'- -GCCGUUUGCAAGGuucgUGCGGUAcc -5'
13971 3' -51.8 NC_003521.1 + 113545 0.74 0.836181
Target:  5'- aCGGCGugucgGACGUgCCGcGCcuggGCGCCAUGGa -3'
miRNA:   3'- -GCCGU-----UUGCAaGGUuCG----UGCGGUACC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.