miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13971 3' -51.8 NC_003521.1 + 352 0.67 0.994339
Target:  5'- gGGCAAACGaUgUggGCGgcgUGCUGUGGa -3'
miRNA:   3'- gCCGUUUGCaAgGuuCGU---GCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 658 0.68 0.985927
Target:  5'- aGGC-AACGUacgCuCAGGCcgACGCCAUGa -3'
miRNA:   3'- gCCGuUUGCAa--G-GUUCG--UGCGGUACc -5'
13971 3' -51.8 NC_003521.1 + 6703 0.66 0.997775
Target:  5'- -cGCGAGCGcugCUggGUcuCGCCGUGGu -3'
miRNA:   3'- gcCGUUUGCaa-GGuuCGu-GCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 7095 0.71 0.953085
Target:  5'- gCGGCGgcGGCGUccuccuucUCCAGGC-CGCUgagGUGGa -3'
miRNA:   3'- -GCCGU--UUGCA--------AGGUUCGuGCGG---UACC- -5'
13971 3' -51.8 NC_003521.1 + 11252 0.73 0.874726
Target:  5'- aCGGCGAACGU--CGAGCcCGCguUGGg -3'
miRNA:   3'- -GCCGUUUGCAagGUUCGuGCGguACC- -5'
13971 3' -51.8 NC_003521.1 + 12527 0.7 0.956942
Target:  5'- cCGGCcGGCGuUUCCAcuu-CGCCGUGGa -3'
miRNA:   3'- -GCCGuUUGC-AAGGUucguGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 14214 0.67 0.99339
Target:  5'- gCGGCGagccccuGACGccgCUggGCuACGCCGUGa -3'
miRNA:   3'- -GCCGU-------UUGCaa-GGuuCG-UGCGGUACc -5'
13971 3' -51.8 NC_003521.1 + 14704 0.78 0.667005
Target:  5'- gGGCAucCGcgCCAAccuguGCACGCCGUGGu -3'
miRNA:   3'- gCCGUuuGCaaGGUU-----CGUGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 14743 0.69 0.972992
Target:  5'- gGGCGuGACGggCCGgccgcggccggGGCGCGCCuucGUGGc -3'
miRNA:   3'- gCCGU-UUGCaaGGU-----------UCGUGCGG---UACC- -5'
13971 3' -51.8 NC_003521.1 + 14981 0.66 0.997284
Target:  5'- -cGCAccacca-CGAGCGCGCCGUGGa -3'
miRNA:   3'- gcCGUuugcaagGUUCGUGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 15722 0.66 0.996382
Target:  5'- uCGGCAucccgcacAACugGUUCCugcAGGUGCGCCcgGGc -3'
miRNA:   3'- -GCCGU--------UUG--CAAGG---UUCGUGCGGuaCC- -5'
13971 3' -51.8 NC_003521.1 + 16119 0.66 0.996382
Target:  5'- gGGCgGGACGUgaacuUCCA--CACGCCcgGGc -3'
miRNA:   3'- gCCG-UUUGCA-----AGGUucGUGCGGuaCC- -5'
13971 3' -51.8 NC_003521.1 + 16262 0.67 0.995104
Target:  5'- gCGGCu-GCGcugccgcuggUUCCugcuGgGCGCCGUGGg -3'
miRNA:   3'- -GCCGuuUGC----------AAGGuu--CgUGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 18040 0.67 0.994258
Target:  5'- aCGuGCAGAaGUUCCucuGCgccgaccccaccgACGCCGUGGc -3'
miRNA:   3'- -GC-CGUUUgCAAGGuu-CG-------------UGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 21933 0.66 0.997775
Target:  5'- uGGCGGGCGgccUCGGGCugGagcaGUGGg -3'
miRNA:   3'- gCCGUUUGCaa-GGUUCGugCgg--UACC- -5'
13971 3' -51.8 NC_003521.1 + 23002 0.67 0.991453
Target:  5'- aCGGUGAuaGCGgcaUCCGAGgAgGCCAaUGGg -3'
miRNA:   3'- -GCCGUU--UGCa--AGGUUCgUgCGGU-ACC- -5'
13971 3' -51.8 NC_003521.1 + 23119 0.66 0.997102
Target:  5'- aCGGCAcaguguauaAACGguuUCCAgaaaggaaaaacaugAGCGC-CCGUGGa -3'
miRNA:   3'- -GCCGU---------UUGCa--AGGU---------------UCGUGcGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 23276 0.66 0.998093
Target:  5'- aCGGCGAGCGacgugcaccgcUUCCuggucuGCACGCgggucuacagcacCGUGGc -3'
miRNA:   3'- -GCCGUUUGC-----------AAGGuu----CGUGCG-------------GUACC- -5'
13971 3' -51.8 NC_003521.1 + 25551 0.66 0.996382
Target:  5'- aCGGCGGACGcuguugUgCAGGCG-GCCGcGGg -3'
miRNA:   3'- -GCCGUUUGCa-----AgGUUCGUgCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 27013 0.66 0.998125
Target:  5'- aCGGCAucgaaaccGAgGcUCCAGGCGCGgCGcagGGg -3'
miRNA:   3'- -GCCGU--------UUgCaAGGUUCGUGCgGUa--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.