miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13971 3' -51.8 NC_003521.1 + 240137 0.66 0.998125
Target:  5'- cCGGCGGGCGcggaAAGCGCugGCuCAUGGc -3'
miRNA:   3'- -GCCGUUUGCaaggUUCGUG--CG-GUACC- -5'
13971 3' -51.8 NC_003521.1 + 239644 0.67 0.992522
Target:  5'- uGGCAcaGGCcgUCCAgucccguaGGCgGCGCCGUGGc -3'
miRNA:   3'- gCCGU--UUGcaAGGU--------UCG-UGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 237178 0.7 0.956942
Target:  5'- aGGCAGACGgcggcggCCGuGGCACGCUAg-- -3'
miRNA:   3'- gCCGUUUGCaa-----GGU-UCGUGCGGUacc -5'
13971 3' -51.8 NC_003521.1 + 236272 0.67 0.994339
Target:  5'- uCGGCAcuCGaUCCucaGAGCaACGCCucgGGg -3'
miRNA:   3'- -GCCGUuuGCaAGG---UUCG-UGCGGua-CC- -5'
13971 3' -51.8 NC_003521.1 + 235135 0.66 0.998125
Target:  5'- aCGGCGccCGUUCCccgcggacGGGCGC-CCGUGu -3'
miRNA:   3'- -GCCGUuuGCAAGG--------UUCGUGcGGUACc -5'
13971 3' -51.8 NC_003521.1 + 234189 0.66 0.997775
Target:  5'- -cGCAAGCGggCCAAGCGuuCGCgCGcGGc -3'
miRNA:   3'- gcCGUUUGCaaGGUUCGU--GCG-GUaCC- -5'
13971 3' -51.8 NC_003521.1 + 233161 0.66 0.996382
Target:  5'- gGGCAc-CGcugUCCGcGC-CGCCGUGGc -3'
miRNA:   3'- gCCGUuuGCa--AGGUuCGuGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 233012 0.68 0.988819
Target:  5'- uCGGUAGGCGUUcugcaccCCGA-CACGCCGUa- -3'
miRNA:   3'- -GCCGUUUGCAA-------GGUUcGUGCGGUAcc -5'
13971 3' -51.8 NC_003521.1 + 232725 0.7 0.970196
Target:  5'- gGGCAGACGacUCCGAGC-CGCUg--- -3'
miRNA:   3'- gCCGUUUGCa-AGGUUCGuGCGGuacc -5'
13971 3' -51.8 NC_003521.1 + 232282 0.68 0.98364
Target:  5'- aCGGUGGAUGUcgucgcgcccacggUCCGGGCACaaucaaCCGUGGu -3'
miRNA:   3'- -GCCGUUUGCA--------------AGGUUCGUGc-----GGUACC- -5'
13971 3' -51.8 NC_003521.1 + 232162 0.71 0.939678
Target:  5'- aCGGCGGAUGgaguuaUCuCGAGaaaaccguccuccCACGCCAUGGg -3'
miRNA:   3'- -GCCGUUUGCa-----AG-GUUC-------------GUGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 224442 0.76 0.765417
Target:  5'- gGGCGAGCGgUCCAGGUGCGUCuUGa -3'
miRNA:   3'- gCCGUUUGCaAGGUUCGUGCGGuACc -5'
13971 3' -51.8 NC_003521.1 + 223188 0.71 0.949002
Target:  5'- uGGCGuACGUagcUCCGcAGCGCGUCggGGu -3'
miRNA:   3'- gCCGUuUGCA---AGGU-UCGUGCGGuaCC- -5'
13971 3' -51.8 NC_003521.1 + 222107 0.66 0.996909
Target:  5'- cCGGC-AGCGUcUCgAGGCgcuGCGCCG-GGa -3'
miRNA:   3'- -GCCGuUUGCA-AGgUUCG---UGCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 221697 0.72 0.925103
Target:  5'- gGGUcu-CGUUgCCGAGCACGCaGUGGu -3'
miRNA:   3'- gCCGuuuGCAA-GGUUCGUGCGgUACC- -5'
13971 3' -51.8 NC_003521.1 + 218443 0.66 0.996909
Target:  5'- gCGGCAccACGgaggacauggCCGGcacCACGCCGUGGg -3'
miRNA:   3'- -GCCGUu-UGCaa--------GGUUc--GUGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 217347 0.66 0.997921
Target:  5'- aCGGCGGccgguccucguacuuGCuGUguaacacggCCAGGCACaCCGUGGg -3'
miRNA:   3'- -GCCGUU---------------UG-CAa--------GGUUCGUGcGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 216851 0.72 0.907939
Target:  5'- gCGGCGGACGacugUUCCAGGC---CCGUGGa -3'
miRNA:   3'- -GCCGUUUGC----AAGGUUCGugcGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 216378 0.7 0.967198
Target:  5'- cCGcGCGGACcuGUUCCGAGCcCGCCGg-- -3'
miRNA:   3'- -GC-CGUUUG--CAAGGUUCGuGCGGUacc -5'
13971 3' -51.8 NC_003521.1 + 214355 0.68 0.987513
Target:  5'- gCGcGCAGGCGgugcucCCAGGcCACGCCGUu- -3'
miRNA:   3'- -GC-CGUUUGCaa----GGUUC-GUGCGGUAcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.