miRNA display CGI


Results 21 - 40 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13971 3' -51.8 NC_003521.1 + 87393 0.66 0.997775
Target:  5'- gCGGCGGAgGUgacgCCGAcGCucACGCCcagGGg -3'
miRNA:   3'- -GCCGUUUgCAa---GGUU-CG--UGCGGua-CC- -5'
13971 3' -51.8 NC_003521.1 + 108634 0.66 0.997775
Target:  5'- uGGcCAGGCGgcugCCGaucAGCGCGCaCGUGu -3'
miRNA:   3'- gCC-GUUUGCaa--GGU---UCGUGCG-GUACc -5'
13971 3' -51.8 NC_003521.1 + 55642 0.66 0.997775
Target:  5'- gGGCGucACGcUCCAcaGGUGCGCCAc-- -3'
miRNA:   3'- gCCGUu-UGCaAGGU--UCGUGCGGUacc -5'
13971 3' -51.8 NC_003521.1 + 74589 0.66 0.997775
Target:  5'- gCGGCGcGGCGUcCCGcggccGGCGCGCCu--- -3'
miRNA:   3'- -GCCGU-UUGCAaGGU-----UCGUGCGGuacc -5'
13971 3' -51.8 NC_003521.1 + 21933 0.66 0.997775
Target:  5'- uGGCGGGCGgccUCGGGCugGagcaGUGGg -3'
miRNA:   3'- gCCGUUUGCaa-GGUUCGugCgg--UACC- -5'
13971 3' -51.8 NC_003521.1 + 169038 0.66 0.997372
Target:  5'- cCGGuCAAGCuggUCUcGGCGCGCCAcgucGGa -3'
miRNA:   3'- -GCC-GUUUGca-AGGuUCGUGCGGUa---CC- -5'
13971 3' -51.8 NC_003521.1 + 95963 0.66 0.997372
Target:  5'- gCGGUAGGCGUacgaCAGGCGCaggaCCGUGa -3'
miRNA:   3'- -GCCGUUUGCAag--GUUCGUGc---GGUACc -5'
13971 3' -51.8 NC_003521.1 + 206957 0.66 0.997372
Target:  5'- aCGGCGAugagcccgugGCGUUCCAcgaAGCgaaugACGCCccaGGc -3'
miRNA:   3'- -GCCGUU----------UGCAAGGU---UCG-----UGCGGua-CC- -5'
13971 3' -51.8 NC_003521.1 + 157564 0.66 0.997372
Target:  5'- -cGCAGGCGUgcUCCcc-CACGCCAaGGa -3'
miRNA:   3'- gcCGUUUGCA--AGGuucGUGCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 14981 0.66 0.997284
Target:  5'- -cGCAccacca-CGAGCGCGCCGUGGa -3'
miRNA:   3'- gcCGUuugcaagGUUCGUGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 23119 0.66 0.997102
Target:  5'- aCGGCAcaguguauaAACGguuUCCAgaaaggaaaaacaugAGCGC-CCGUGGa -3'
miRNA:   3'- -GCCGU---------UUGCa--AGGU---------------UCGUGcGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 222107 0.66 0.996909
Target:  5'- cCGGC-AGCGUcUCgAGGCgcuGCGCCG-GGa -3'
miRNA:   3'- -GCCGuUUGCA-AGgUUCG---UGCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 91028 0.66 0.996909
Target:  5'- aCGGCcGGcCGUUCgcGGaACGCCGUGGc -3'
miRNA:   3'- -GCCGuUU-GCAAGguUCgUGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 91625 0.66 0.996909
Target:  5'- uGGguGGCGUagUCCucguGGC-CGCCgGUGGc -3'
miRNA:   3'- gCCguUUGCA--AGGu---UCGuGCGG-UACC- -5'
13971 3' -51.8 NC_003521.1 + 74540 0.66 0.996909
Target:  5'- aGGCcacGCGgaCCAGcCGCGCCGUGc -3'
miRNA:   3'- gCCGuu-UGCaaGGUUcGUGCGGUACc -5'
13971 3' -51.8 NC_003521.1 + 218443 0.66 0.996909
Target:  5'- gCGGCAccACGgaggacauggCCGGcacCACGCCGUGGg -3'
miRNA:   3'- -GCCGUu-UGCaa--------GGUUc--GUGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 195329 0.66 0.996909
Target:  5'- aCGGC-GACGUguagaAGGC-UGCCGUGGu -3'
miRNA:   3'- -GCCGuUUGCAagg--UUCGuGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 150928 0.66 0.996909
Target:  5'- aCGGCGugUGggCCGAGCGCGgUCAg-- -3'
miRNA:   3'- -GCCGUuuGCaaGGUUCGUGC-GGUacc -5'
13971 3' -51.8 NC_003521.1 + 29154 0.66 0.996909
Target:  5'- -uGCAGAcCGUgUCCGAGCugGCCu--- -3'
miRNA:   3'- gcCGUUU-GCA-AGGUUCGugCGGuacc -5'
13971 3' -51.8 NC_003521.1 + 124841 0.66 0.996909
Target:  5'- -aGCAGAUuUUC---GCGCGCCAUGGg -3'
miRNA:   3'- gcCGUUUGcAAGguuCGUGCGGUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.