miRNA display CGI


Results 41 - 60 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13971 3' -51.8 NC_003521.1 + 222107 0.66 0.996909
Target:  5'- cCGGC-AGCGUcUCgAGGCgcuGCGCCG-GGa -3'
miRNA:   3'- -GCCGuUUGCA-AGgUUCG---UGCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 124841 0.66 0.996909
Target:  5'- -aGCAGAUuUUC---GCGCGCCAUGGg -3'
miRNA:   3'- gcCGUUUGcAAGguuCGUGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 218443 0.66 0.996909
Target:  5'- gCGGCAccACGgaggacauggCCGGcacCACGCCGUGGg -3'
miRNA:   3'- -GCCGUu-UGCaa--------GGUUc--GUGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 150928 0.66 0.996909
Target:  5'- aCGGCGugUGggCCGAGCGCGgUCAg-- -3'
miRNA:   3'- -GCCGUuuGCaaGGUUCGUGC-GGUacc -5'
13971 3' -51.8 NC_003521.1 + 76991 0.66 0.996909
Target:  5'- gCGGCGAugGg--CAGGCACGgCAUc- -3'
miRNA:   3'- -GCCGUUugCaagGUUCGUGCgGUAcc -5'
13971 3' -51.8 NC_003521.1 + 145871 0.66 0.99686
Target:  5'- gCGGCGGGCGgcgCCGacgacgaGGC-CGCCGgcggcgGGa -3'
miRNA:   3'- -GCCGUUUGCaa-GGU-------UCGuGCGGUa-----CC- -5'
13971 3' -51.8 NC_003521.1 + 87927 0.66 0.996382
Target:  5'- uGGCcgcCGcgCCGGGCAUGCucuuCAUGGa -3'
miRNA:   3'- gCCGuuuGCaaGGUUCGUGCG----GUACC- -5'
13971 3' -51.8 NC_003521.1 + 64334 0.66 0.996382
Target:  5'- aCGaGCAGAUGagCCAGcuGCAgGCCcUGGg -3'
miRNA:   3'- -GC-CGUUUGCaaGGUU--CGUgCGGuACC- -5'
13971 3' -51.8 NC_003521.1 + 25551 0.66 0.996382
Target:  5'- aCGGCGGACGcuguugUgCAGGCG-GCCGcGGg -3'
miRNA:   3'- -GCCGUUUGCa-----AgGUUCGUgCGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 15722 0.66 0.996382
Target:  5'- uCGGCAucccgcacAACugGUUCCugcAGGUGCGCCcgGGc -3'
miRNA:   3'- -GCCGU--------UUG--CAAGG---UUCGUGCGGuaCC- -5'
13971 3' -51.8 NC_003521.1 + 53200 0.66 0.996382
Target:  5'- gCGGCGcGCGgcCCGgcucgcccuGGCAgGCCGUGc -3'
miRNA:   3'- -GCCGUuUGCaaGGU---------UCGUgCGGUACc -5'
13971 3' -51.8 NC_003521.1 + 118191 0.66 0.996382
Target:  5'- cCGGCAAAguCGgggccgCCGAGCGCGCgGc-- -3'
miRNA:   3'- -GCCGUUU--GCaa----GGUUCGUGCGgUacc -5'
13971 3' -51.8 NC_003521.1 + 96654 0.66 0.996382
Target:  5'- gCGGCAGGCGgcgCCGgcgugcuugaagAGCaACGCCucGGa -3'
miRNA:   3'- -GCCGUUUGCaa-GGU------------UCG-UGCGGuaCC- -5'
13971 3' -51.8 NC_003521.1 + 16119 0.66 0.996382
Target:  5'- gGGCgGGACGUgaacuUCCA--CACGCCcgGGc -3'
miRNA:   3'- gCCG-UUUGCA-----AGGUucGUGCGGuaCC- -5'
13971 3' -51.8 NC_003521.1 + 121459 0.66 0.996382
Target:  5'- cCGGCGGACaucCCcGGCGUGuCCAUGGa -3'
miRNA:   3'- -GCCGUUUGcaaGGuUCGUGC-GGUACC- -5'
13971 3' -51.8 NC_003521.1 + 233161 0.66 0.996382
Target:  5'- gGGCAc-CGcugUCCGcGC-CGCCGUGGc -3'
miRNA:   3'- gCCGUuuGCa--AGGUuCGuGCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 74084 0.66 0.996031
Target:  5'- uGGCGGGCGaggucUUCCccgccaaggaugauAGCugGCUGUGGc -3'
miRNA:   3'- gCCGUUUGC-----AAGGu-------------UCGugCGGUACC- -5'
13971 3' -51.8 NC_003521.1 + 196253 0.66 0.995782
Target:  5'- gCGGUuucuGugGUUCCGGGUAC-CCGcGGu -3'
miRNA:   3'- -GCCGu---UugCAAGGUUCGUGcGGUaCC- -5'
13971 3' -51.8 NC_003521.1 + 90038 0.66 0.995782
Target:  5'- gCGGUAGACGgccUCCAgcuccGGgACGCCGa-- -3'
miRNA:   3'- -GCCGUUUGCa--AGGU-----UCgUGCGGUacc -5'
13971 3' -51.8 NC_003521.1 + 102362 0.66 0.995782
Target:  5'- uGGCAGAUGUggcgCCGccggcgauGCACGCgCggGGa -3'
miRNA:   3'- gCCGUUUGCAa---GGUu-------CGUGCG-GuaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.